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Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins

Adiabatically swept pulses were originally designed for the purpose of broadband spin inversion. Later, unexpected advantages of their utilization were also found in other applications, such as refocusing to excite spin echoes, studies of chemical exchange or fragment-based drug design. Here, we pre...

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Autores principales: Kadeřávek, Pavel, Grutsch, Sarina, Salvi, Nicola, Tollinger, Martin, Žídek, Lukáš, Bodenhausen, Geoffrey, Ferrage, Fabien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662729/
https://www.ncbi.nlm.nih.gov/pubmed/26507334
http://dx.doi.org/10.1007/s10858-015-9994-8
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author Kadeřávek, Pavel
Grutsch, Sarina
Salvi, Nicola
Tollinger, Martin
Žídek, Lukáš
Bodenhausen, Geoffrey
Ferrage, Fabien
author_facet Kadeřávek, Pavel
Grutsch, Sarina
Salvi, Nicola
Tollinger, Martin
Žídek, Lukáš
Bodenhausen, Geoffrey
Ferrage, Fabien
author_sort Kadeřávek, Pavel
collection PubMed
description Adiabatically swept pulses were originally designed for the purpose of broadband spin inversion. Later, unexpected advantages of their utilization were also found in other applications, such as refocusing to excite spin echoes, studies of chemical exchange or fragment-based drug design. Here, we present new experiments to characterize fast (ps–ns) protein dynamics, which benefit from little-known properties of adiabatic pulses. We developed a strategy for measuring cross-correlated cross-relaxation (CCCR) rates during adiabatic pulses. This experiment provides a linear combination of longitudinal and transverse CCCR rates, which is offset-independent across a typical amide [Formula: see text] spectrum. The pulse sequence can be recast to provide accurate transverse CCCR rates weighted by the populations of exchanging states. Sensitivity can be improved in systems in slow exchange. Finally, the experiments can be easily modified to yield residue-specific correlation times. The average correlation time of motions can be determined with a single experiment while at least two different experiments had to be recorded until now. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-015-9994-8) contains supplementary material, which is available to authorized users.
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spelling pubmed-46627292015-12-04 Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins Kadeřávek, Pavel Grutsch, Sarina Salvi, Nicola Tollinger, Martin Žídek, Lukáš Bodenhausen, Geoffrey Ferrage, Fabien J Biomol NMR Article Adiabatically swept pulses were originally designed for the purpose of broadband spin inversion. Later, unexpected advantages of their utilization were also found in other applications, such as refocusing to excite spin echoes, studies of chemical exchange or fragment-based drug design. Here, we present new experiments to characterize fast (ps–ns) protein dynamics, which benefit from little-known properties of adiabatic pulses. We developed a strategy for measuring cross-correlated cross-relaxation (CCCR) rates during adiabatic pulses. This experiment provides a linear combination of longitudinal and transverse CCCR rates, which is offset-independent across a typical amide [Formula: see text] spectrum. The pulse sequence can be recast to provide accurate transverse CCCR rates weighted by the populations of exchanging states. Sensitivity can be improved in systems in slow exchange. Finally, the experiments can be easily modified to yield residue-specific correlation times. The average correlation time of motions can be determined with a single experiment while at least two different experiments had to be recorded until now. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-015-9994-8) contains supplementary material, which is available to authorized users. Springer Netherlands 2015-10-28 2015 /pmc/articles/PMC4662729/ /pubmed/26507334 http://dx.doi.org/10.1007/s10858-015-9994-8 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Kadeřávek, Pavel
Grutsch, Sarina
Salvi, Nicola
Tollinger, Martin
Žídek, Lukáš
Bodenhausen, Geoffrey
Ferrage, Fabien
Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
title Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
title_full Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
title_fullStr Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
title_full_unstemmed Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
title_short Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
title_sort cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662729/
https://www.ncbi.nlm.nih.gov/pubmed/26507334
http://dx.doi.org/10.1007/s10858-015-9994-8
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