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Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins
Adiabatically swept pulses were originally designed for the purpose of broadband spin inversion. Later, unexpected advantages of their utilization were also found in other applications, such as refocusing to excite spin echoes, studies of chemical exchange or fragment-based drug design. Here, we pre...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662729/ https://www.ncbi.nlm.nih.gov/pubmed/26507334 http://dx.doi.org/10.1007/s10858-015-9994-8 |
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author | Kadeřávek, Pavel Grutsch, Sarina Salvi, Nicola Tollinger, Martin Žídek, Lukáš Bodenhausen, Geoffrey Ferrage, Fabien |
author_facet | Kadeřávek, Pavel Grutsch, Sarina Salvi, Nicola Tollinger, Martin Žídek, Lukáš Bodenhausen, Geoffrey Ferrage, Fabien |
author_sort | Kadeřávek, Pavel |
collection | PubMed |
description | Adiabatically swept pulses were originally designed for the purpose of broadband spin inversion. Later, unexpected advantages of their utilization were also found in other applications, such as refocusing to excite spin echoes, studies of chemical exchange or fragment-based drug design. Here, we present new experiments to characterize fast (ps–ns) protein dynamics, which benefit from little-known properties of adiabatic pulses. We developed a strategy for measuring cross-correlated cross-relaxation (CCCR) rates during adiabatic pulses. This experiment provides a linear combination of longitudinal and transverse CCCR rates, which is offset-independent across a typical amide [Formula: see text] spectrum. The pulse sequence can be recast to provide accurate transverse CCCR rates weighted by the populations of exchanging states. Sensitivity can be improved in systems in slow exchange. Finally, the experiments can be easily modified to yield residue-specific correlation times. The average correlation time of motions can be determined with a single experiment while at least two different experiments had to be recorded until now. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-015-9994-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4662729 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-46627292015-12-04 Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins Kadeřávek, Pavel Grutsch, Sarina Salvi, Nicola Tollinger, Martin Žídek, Lukáš Bodenhausen, Geoffrey Ferrage, Fabien J Biomol NMR Article Adiabatically swept pulses were originally designed for the purpose of broadband spin inversion. Later, unexpected advantages of their utilization were also found in other applications, such as refocusing to excite spin echoes, studies of chemical exchange or fragment-based drug design. Here, we present new experiments to characterize fast (ps–ns) protein dynamics, which benefit from little-known properties of adiabatic pulses. We developed a strategy for measuring cross-correlated cross-relaxation (CCCR) rates during adiabatic pulses. This experiment provides a linear combination of longitudinal and transverse CCCR rates, which is offset-independent across a typical amide [Formula: see text] spectrum. The pulse sequence can be recast to provide accurate transverse CCCR rates weighted by the populations of exchanging states. Sensitivity can be improved in systems in slow exchange. Finally, the experiments can be easily modified to yield residue-specific correlation times. The average correlation time of motions can be determined with a single experiment while at least two different experiments had to be recorded until now. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-015-9994-8) contains supplementary material, which is available to authorized users. Springer Netherlands 2015-10-28 2015 /pmc/articles/PMC4662729/ /pubmed/26507334 http://dx.doi.org/10.1007/s10858-015-9994-8 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Kadeřávek, Pavel Grutsch, Sarina Salvi, Nicola Tollinger, Martin Žídek, Lukáš Bodenhausen, Geoffrey Ferrage, Fabien Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
title | Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
title_full | Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
title_fullStr | Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
title_full_unstemmed | Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
title_short | Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
title_sort | cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662729/ https://www.ncbi.nlm.nih.gov/pubmed/26507334 http://dx.doi.org/10.1007/s10858-015-9994-8 |
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