Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction

Colonization of the roots of different plant species by Piriformospora indica results in better plant performance and biotic and abiotic stress tolerance. An increase of the biomass and seed yield is other beneficial effect of P. indica for the host plants. The interaction of P. indica with Arabidop...

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Autores principales: Vahabi, Khabat, Sherameti, Irena, Bakshi, Madhunita, Mrozinska, Anna, Ludwig, Anatoli, Oelmüller, Ralf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664658/
https://www.ncbi.nlm.nih.gov/pubmed/26697320
http://dx.doi.org/10.1016/j.gdata.2015.07.019
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author Vahabi, Khabat
Sherameti, Irena
Bakshi, Madhunita
Mrozinska, Anna
Ludwig, Anatoli
Oelmüller, Ralf
author_facet Vahabi, Khabat
Sherameti, Irena
Bakshi, Madhunita
Mrozinska, Anna
Ludwig, Anatoli
Oelmüller, Ralf
author_sort Vahabi, Khabat
collection PubMed
description Colonization of the roots of different plant species by Piriformospora indica results in better plant performance and biotic and abiotic stress tolerance. An increase of the biomass and seed yield is other beneficial effect of P. indica for the host plants. The interaction of P. indica with Arabidopsis thaliana roots is a unique model system to study symbiotic relationships. We describe a co-cultivation system which allows us to investigate the effects of fungal exudates on the root transcriptome before and after the establishment of a physical contact, and during early phases of root colonization. We present a detailed protocol which facilitates easy reproduction of the results (NCBI GEO accession number GSE58771) published by Vahabi et al. (2015) in BMC Plant Biology [1].
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spelling pubmed-46646582015-12-22 Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction Vahabi, Khabat Sherameti, Irena Bakshi, Madhunita Mrozinska, Anna Ludwig, Anatoli Oelmüller, Ralf Genom Data Data in Brief Colonization of the roots of different plant species by Piriformospora indica results in better plant performance and biotic and abiotic stress tolerance. An increase of the biomass and seed yield is other beneficial effect of P. indica for the host plants. The interaction of P. indica with Arabidopsis thaliana roots is a unique model system to study symbiotic relationships. We describe a co-cultivation system which allows us to investigate the effects of fungal exudates on the root transcriptome before and after the establishment of a physical contact, and during early phases of root colonization. We present a detailed protocol which facilitates easy reproduction of the results (NCBI GEO accession number GSE58771) published by Vahabi et al. (2015) in BMC Plant Biology [1]. Elsevier 2015-07-30 /pmc/articles/PMC4664658/ /pubmed/26697320 http://dx.doi.org/10.1016/j.gdata.2015.07.019 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Vahabi, Khabat
Sherameti, Irena
Bakshi, Madhunita
Mrozinska, Anna
Ludwig, Anatoli
Oelmüller, Ralf
Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction
title Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction
title_full Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction
title_fullStr Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction
title_full_unstemmed Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction
title_short Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction
title_sort microarray analyses during early and later stages of the arabidopsis/piriformospora indica interaction
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664658/
https://www.ncbi.nlm.nih.gov/pubmed/26697320
http://dx.doi.org/10.1016/j.gdata.2015.07.019
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