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De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle
Sour cherry (Prunus cerasus) in the genus Prunus in the family Rosaceae is one of the most popular stone fruit trees worldwide. Of known sour cherry cultivars, the Schattenmorelle is a famous old sour cherry with a high amount of fruit production. The Schattenmorelle was selected before 1650 and des...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664768/ https://www.ncbi.nlm.nih.gov/pubmed/26697395 http://dx.doi.org/10.1016/j.gdata.2015.10.013 |
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author | Jo, Yeonhwa Chu, Hyosub Cho, Jin Kyong Choi, Hoseong Lian, Sen Cho, Won Kyong |
author_facet | Jo, Yeonhwa Chu, Hyosub Cho, Jin Kyong Choi, Hoseong Lian, Sen Cho, Won Kyong |
author_sort | Jo, Yeonhwa |
collection | PubMed |
description | Sour cherry (Prunus cerasus) in the genus Prunus in the family Rosaceae is one of the most popular stone fruit trees worldwide. Of known sour cherry cultivars, the Schattenmorelle is a famous old sour cherry with a high amount of fruit production. The Schattenmorelle was selected before 1650 and described in the 1800s. This cultivar was named after gardens of the Chateau de Moreille in which the cultivar was initially found. In order to identify new genes and to develop genetic markers for sour cherry, we performed a transcriptome analysis of a sour cherry. We selected the cultivar Schattenmorelle, which is among commercially important cultivars in Europe and North America. We obtained 2.05 GB raw data from the Schattenmorelle (NCBI accession number: SRX1187170). De novo transcriptome assembly using Trinity identified 61,053 transcripts in which N50 was 611 bp. Next, we identified 25,585 protein coding sequences using TransDecoder. The identified proteins were blasted against NCBI's non-redundant database for annotation. Based on blast search, we taxonomically classified the obtained sequences. As a result, we provide the transcriptome of sour cherry cultivar Schattenmorelle using next generation sequencing. |
format | Online Article Text |
id | pubmed-4664768 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-46647682015-12-22 De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle Jo, Yeonhwa Chu, Hyosub Cho, Jin Kyong Choi, Hoseong Lian, Sen Cho, Won Kyong Genom Data Data in Brief Sour cherry (Prunus cerasus) in the genus Prunus in the family Rosaceae is one of the most popular stone fruit trees worldwide. Of known sour cherry cultivars, the Schattenmorelle is a famous old sour cherry with a high amount of fruit production. The Schattenmorelle was selected before 1650 and described in the 1800s. This cultivar was named after gardens of the Chateau de Moreille in which the cultivar was initially found. In order to identify new genes and to develop genetic markers for sour cherry, we performed a transcriptome analysis of a sour cherry. We selected the cultivar Schattenmorelle, which is among commercially important cultivars in Europe and North America. We obtained 2.05 GB raw data from the Schattenmorelle (NCBI accession number: SRX1187170). De novo transcriptome assembly using Trinity identified 61,053 transcripts in which N50 was 611 bp. Next, we identified 25,585 protein coding sequences using TransDecoder. The identified proteins were blasted against NCBI's non-redundant database for annotation. Based on blast search, we taxonomically classified the obtained sequences. As a result, we provide the transcriptome of sour cherry cultivar Schattenmorelle using next generation sequencing. Elsevier 2015-10-19 /pmc/articles/PMC4664768/ /pubmed/26697395 http://dx.doi.org/10.1016/j.gdata.2015.10.013 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Jo, Yeonhwa Chu, Hyosub Cho, Jin Kyong Choi, Hoseong Lian, Sen Cho, Won Kyong De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle |
title | De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle |
title_full | De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle |
title_fullStr | De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle |
title_full_unstemmed | De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle |
title_short | De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle |
title_sort | de novo transcriptome assembly of a sour cherry cultivar, schattenmorelle |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664768/ https://www.ncbi.nlm.nih.gov/pubmed/26697395 http://dx.doi.org/10.1016/j.gdata.2015.10.013 |
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