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Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos
Bradyrhizobium sp. WSM1253 is a novel N(2)-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhi...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665870/ https://www.ncbi.nlm.nih.gov/pubmed/26629308 http://dx.doi.org/10.1186/s40793-015-0115-9 |
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author | Tiwari, Ravi Howieson, John Yates, Ron Tian, Rui Held, Britanny Tapia, Roxanne Han, Cliff Seshadri, Rekha Reddy, T. B. K. Huntemann, Marcel Pati, Amrita Woyke, Tanja Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne |
author_facet | Tiwari, Ravi Howieson, John Yates, Ron Tian, Rui Held, Britanny Tapia, Roxanne Han, Cliff Seshadri, Rekha Reddy, T. B. K. Huntemann, Marcel Pati, Amrita Woyke, Tanja Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne |
author_sort | Tiwari, Ravi |
collection | PubMed |
description | Bradyrhizobium sp. WSM1253 is a novel N(2)-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhizobial strains for inoculation of Mediterranean species of lupins (Lupinus angustifolius, L. princei, L. atlanticus, L. pilosus). In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 8,719,808 bp genome has a G + C content of 63.09 % with 71 contigs arranged into two scaffolds. The assembled genome contains 8,432 protein-coding genes, 66 RNA genes and a single rRNA operon. This improved-high-quality draft rhizobial genome is one of 20 sequenced through a DOE Joint Genome Institute 2010 Community Sequencing Project. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0115-9) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4665870 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46658702015-12-02 Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos Tiwari, Ravi Howieson, John Yates, Ron Tian, Rui Held, Britanny Tapia, Roxanne Han, Cliff Seshadri, Rekha Reddy, T. B. K. Huntemann, Marcel Pati, Amrita Woyke, Tanja Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Bradyrhizobium sp. WSM1253 is a novel N(2)-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhizobial strains for inoculation of Mediterranean species of lupins (Lupinus angustifolius, L. princei, L. atlanticus, L. pilosus). In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 8,719,808 bp genome has a G + C content of 63.09 % with 71 contigs arranged into two scaffolds. The assembled genome contains 8,432 protein-coding genes, 66 RNA genes and a single rRNA operon. This improved-high-quality draft rhizobial genome is one of 20 sequenced through a DOE Joint Genome Institute 2010 Community Sequencing Project. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0115-9) contains supplementary material, which is available to authorized users. BioMed Central 2015-11-30 /pmc/articles/PMC4665870/ /pubmed/26629308 http://dx.doi.org/10.1186/s40793-015-0115-9 Text en © Tiwari et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Tiwari, Ravi Howieson, John Yates, Ron Tian, Rui Held, Britanny Tapia, Roxanne Han, Cliff Seshadri, Rekha Reddy, T. B. K. Huntemann, Marcel Pati, Amrita Woyke, Tanja Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos |
title | Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos |
title_full | Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos |
title_fullStr | Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos |
title_full_unstemmed | Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos |
title_short | Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos |
title_sort | genome sequence of bradyrhizobium sp. wsm1253; a microsymbiont of ornithopus compressus from the greek island of sifnos |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665870/ https://www.ncbi.nlm.nih.gov/pubmed/26629308 http://dx.doi.org/10.1186/s40793-015-0115-9 |
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