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Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4
Burkholderia caribensis MBA4 was isolated from soil for its capability to grow on haloacids. This bacterium has a genome size of 9,482,704 bp. Here we report the genome sequences and annotation, together with characteristics of the genome. The complete genome sequence consists of three replicons, co...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665904/ https://www.ncbi.nlm.nih.gov/pubmed/26629309 http://dx.doi.org/10.1186/s40793-015-0109-7 |
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author | Pan, Yanling Kong, Ka Fai Tsang, Jimmy S. H. |
author_facet | Pan, Yanling Kong, Ka Fai Tsang, Jimmy S. H. |
author_sort | Pan, Yanling |
collection | PubMed |
description | Burkholderia caribensis MBA4 was isolated from soil for its capability to grow on haloacids. This bacterium has a genome size of 9,482,704 bp. Here we report the genome sequences and annotation, together with characteristics of the genome. The complete genome sequence consists of three replicons, comprising 9056 protein-coding genes and 80 RNA genes. Genes responsible for dehalogenation and uptake of haloacids were arranged as an operon. While dehalogenation of haloacetate would produce glycolate, three glycolate operons were identified. Two of these operons contain an upstream glcC regulator gene. It is likely that the expression of one of these operons is responsive to haloacetate. Genes responsible for the metabolism of dehalogenation product of halopropionate were also identified. |
format | Online Article Text |
id | pubmed-4665904 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46659042015-12-02 Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 Pan, Yanling Kong, Ka Fai Tsang, Jimmy S. H. Stand Genomic Sci Short Genome Report Burkholderia caribensis MBA4 was isolated from soil for its capability to grow on haloacids. This bacterium has a genome size of 9,482,704 bp. Here we report the genome sequences and annotation, together with characteristics of the genome. The complete genome sequence consists of three replicons, comprising 9056 protein-coding genes and 80 RNA genes. Genes responsible for dehalogenation and uptake of haloacids were arranged as an operon. While dehalogenation of haloacetate would produce glycolate, three glycolate operons were identified. Two of these operons contain an upstream glcC regulator gene. It is likely that the expression of one of these operons is responsive to haloacetate. Genes responsible for the metabolism of dehalogenation product of halopropionate were also identified. BioMed Central 2015-12-01 /pmc/articles/PMC4665904/ /pubmed/26629309 http://dx.doi.org/10.1186/s40793-015-0109-7 Text en © Pan et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Pan, Yanling Kong, Ka Fai Tsang, Jimmy S. H. Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 |
title | Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 |
title_full | Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 |
title_fullStr | Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 |
title_full_unstemmed | Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 |
title_short | Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4 |
title_sort | complete genome sequence and characterization of the haloacid–degrading burkholderia caribensis mba4 |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665904/ https://www.ncbi.nlm.nih.gov/pubmed/26629309 http://dx.doi.org/10.1186/s40793-015-0109-7 |
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