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Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data

Tomographic medical imaging systems produce hundreds to thousands of slices, enabling three-dimensional (3D) analysis. Radiologists process these images through various tools and techniques in order to generate 3D renderings for various applications, such as surgical planning, medical education, and...

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Autores principales: Fischer, Felix, Selver, M. Alper, Gezer, Sinem, Dicle, Oğuz, Hillen, Walter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666236/
https://www.ncbi.nlm.nih.gov/pubmed/26692829
http://dx.doi.org/10.1007/s40846-015-0097-5
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author Fischer, Felix
Selver, M. Alper
Gezer, Sinem
Dicle, Oğuz
Hillen, Walter
author_facet Fischer, Felix
Selver, M. Alper
Gezer, Sinem
Dicle, Oğuz
Hillen, Walter
author_sort Fischer, Felix
collection PubMed
description Tomographic medical imaging systems produce hundreds to thousands of slices, enabling three-dimensional (3D) analysis. Radiologists process these images through various tools and techniques in order to generate 3D renderings for various applications, such as surgical planning, medical education, and volumetric measurements. To save and store these visualizations, current systems use snapshots or video exporting, which prevents further optimizations and requires the storage of significant additional data. The Grayscale Softcopy Presentation State extension of the Digital Imaging and Communications in Medicine (DICOM) standard resolves this issue for two-dimensional (2D) data by introducing an extensive set of parameters, namely 2D Presentation States (2DPR), that describe how an image should be displayed. 2DPR allows storing these parameters instead of storing parameter applied images, which cause unnecessary duplication of the image data. Since there is currently no corresponding extension for 3D data, in this study, a DICOM-compliant object called 3D presentation states (3DPR) is proposed for the parameterization and storage of 3D medical volumes. To accomplish this, the 3D medical visualization process is divided into four tasks, namely pre-processing, segmentation, post-processing, and rendering. The important parameters of each task are determined. Special focus is given to the compression of segmented data, parameterization of the rendering process, and DICOM-compliant implementation of the 3DPR object. The use of 3DPR was tested in a radiology department on three clinical cases, which require multiple segmentations and visualizations during the workflow of radiologists. The results show that 3DPR can effectively simplify the workload of physicians by directly regenerating 3D renderings without repeating intermediate tasks, increase efficiency by preserving all user interactions, and provide efficient storage as well as transfer of visualized data. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s40846-015-0097-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-46662362015-12-09 Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data Fischer, Felix Selver, M. Alper Gezer, Sinem Dicle, Oğuz Hillen, Walter J Med Biol Eng Original Article Tomographic medical imaging systems produce hundreds to thousands of slices, enabling three-dimensional (3D) analysis. Radiologists process these images through various tools and techniques in order to generate 3D renderings for various applications, such as surgical planning, medical education, and volumetric measurements. To save and store these visualizations, current systems use snapshots or video exporting, which prevents further optimizations and requires the storage of significant additional data. The Grayscale Softcopy Presentation State extension of the Digital Imaging and Communications in Medicine (DICOM) standard resolves this issue for two-dimensional (2D) data by introducing an extensive set of parameters, namely 2D Presentation States (2DPR), that describe how an image should be displayed. 2DPR allows storing these parameters instead of storing parameter applied images, which cause unnecessary duplication of the image data. Since there is currently no corresponding extension for 3D data, in this study, a DICOM-compliant object called 3D presentation states (3DPR) is proposed for the parameterization and storage of 3D medical volumes. To accomplish this, the 3D medical visualization process is divided into four tasks, namely pre-processing, segmentation, post-processing, and rendering. The important parameters of each task are determined. Special focus is given to the compression of segmented data, parameterization of the rendering process, and DICOM-compliant implementation of the 3DPR object. The use of 3DPR was tested in a radiology department on three clinical cases, which require multiple segmentations and visualizations during the workflow of radiologists. The results show that 3DPR can effectively simplify the workload of physicians by directly regenerating 3D renderings without repeating intermediate tasks, increase efficiency by preserving all user interactions, and provide efficient storage as well as transfer of visualized data. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s40846-015-0097-5) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2015-11-18 2015 /pmc/articles/PMC4666236/ /pubmed/26692829 http://dx.doi.org/10.1007/s40846-015-0097-5 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Fischer, Felix
Selver, M. Alper
Gezer, Sinem
Dicle, Oğuz
Hillen, Walter
Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data
title Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data
title_full Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data
title_fullStr Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data
title_full_unstemmed Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data
title_short Systematic Parameterization, Storage, and Representation of Volumetric DICOM Data
title_sort systematic parameterization, storage, and representation of volumetric dicom data
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666236/
https://www.ncbi.nlm.nih.gov/pubmed/26692829
http://dx.doi.org/10.1007/s40846-015-0097-5
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