Cargando…
Discovery and characterization of Alu repeat sequences via precise local read assembly
Alu insertions have contributed to >11% of the human genome and ∼30–35 Alu subfamilies remain actively mobile, yet the characterization of polymorphic Alu insertions from short-read data remains a challenge. We build on existing computational methods to combine Alu detection and de novo assembly...
Autores principales: | Wildschutte, Julia H., Baron, Alayna, Diroff, Nicolette M., Kidd, Jeffrey M. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666360/ https://www.ncbi.nlm.nih.gov/pubmed/26503250 http://dx.doi.org/10.1093/nar/gkv1089 |
Ejemplares similares
-
Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells
por: Rodriguez, Jairo, et al.
Publicado: (2008) -
Alu repeats increase local recombination rates
por: Witherspoon, David J, et al.
Publicado: (2009) -
Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells
por: Lubelsky, Yoav, et al.
Publicado: (2018) -
Altered DNA repair creates novel Alu/Alu repeat‐mediated deletions
por: Morales, Maria E., et al.
Publicado: (2021) -
AluMine: alignment-free method for the discovery of polymorphic Alu element insertions
por: Puurand, Tarmo, et al.
Publicado: (2019)