Cargando…

The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images

Binding of enzymes to the substrate is the first step in enzymatic hydrolysis of lignocellulose, a key process within biorefining. During this process elongated plant cells such as fibers and tracheids have been found to break into segments at irregular cell wall regions known as dislocations or sli...

Descripción completa

Detalles Bibliográficos
Autores principales: Hidayat, Budi J., Weisskopf, Carmen, Felby, Claus, Johansen, Katja S., Thygesen, Lisbeth G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666858/
https://www.ncbi.nlm.nih.gov/pubmed/26626331
http://dx.doi.org/10.1186/s13568-015-0165-9
_version_ 1782403748770873344
author Hidayat, Budi J.
Weisskopf, Carmen
Felby, Claus
Johansen, Katja S.
Thygesen, Lisbeth G.
author_facet Hidayat, Budi J.
Weisskopf, Carmen
Felby, Claus
Johansen, Katja S.
Thygesen, Lisbeth G.
author_sort Hidayat, Budi J.
collection PubMed
description Binding of enzymes to the substrate is the first step in enzymatic hydrolysis of lignocellulose, a key process within biorefining. During this process elongated plant cells such as fibers and tracheids have been found to break into segments at irregular cell wall regions known as dislocations or slip planes. Here we study whether cellulases bind to dislocations to a higher extent than to the surrounding cell wall. The binding of fluorescently labelled cellobiohydrolases and endoglucanases to filter paper fibers was investigated using confocal laser scanning microscopy and a ratiometric method was developed to assess and quantify the abundance of the binding of cellulases to dislocations as compared to the surrounding cell wall. Only Humicola insolens EGV was found to have stronger binding preference to dislocations than to the surrounding cell wall, while no difference in binding affinity was seen for any of the other cellulose variants included in the study (H. insolens EGV variants, Trichoderma reesei CBHI, CBHII and EGII). This result favours the hypothesis that fibers break at dislocations during the initial phase of hydrolysis mostly due to mechanical failure rather than as a result of faster degradation at these locations.
format Online
Article
Text
id pubmed-4666858
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-46668582015-12-11 The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images Hidayat, Budi J. Weisskopf, Carmen Felby, Claus Johansen, Katja S. Thygesen, Lisbeth G. AMB Express Original Article Binding of enzymes to the substrate is the first step in enzymatic hydrolysis of lignocellulose, a key process within biorefining. During this process elongated plant cells such as fibers and tracheids have been found to break into segments at irregular cell wall regions known as dislocations or slip planes. Here we study whether cellulases bind to dislocations to a higher extent than to the surrounding cell wall. The binding of fluorescently labelled cellobiohydrolases and endoglucanases to filter paper fibers was investigated using confocal laser scanning microscopy and a ratiometric method was developed to assess and quantify the abundance of the binding of cellulases to dislocations as compared to the surrounding cell wall. Only Humicola insolens EGV was found to have stronger binding preference to dislocations than to the surrounding cell wall, while no difference in binding affinity was seen for any of the other cellulose variants included in the study (H. insolens EGV variants, Trichoderma reesei CBHI, CBHII and EGII). This result favours the hypothesis that fibers break at dislocations during the initial phase of hydrolysis mostly due to mechanical failure rather than as a result of faster degradation at these locations. Springer Berlin Heidelberg 2015-12-01 /pmc/articles/PMC4666858/ /pubmed/26626331 http://dx.doi.org/10.1186/s13568-015-0165-9 Text en © Hidayat et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Hidayat, Budi J.
Weisskopf, Carmen
Felby, Claus
Johansen, Katja S.
Thygesen, Lisbeth G.
The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images
title The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images
title_full The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images
title_fullStr The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images
title_full_unstemmed The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images
title_short The binding of cellulase variants to dislocations: a semi-quantitative analysis based on CLSM (confocal laser scanning microscopy) images
title_sort binding of cellulase variants to dislocations: a semi-quantitative analysis based on clsm (confocal laser scanning microscopy) images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666858/
https://www.ncbi.nlm.nih.gov/pubmed/26626331
http://dx.doi.org/10.1186/s13568-015-0165-9
work_keys_str_mv AT hidayatbudij thebindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT weisskopfcarmen thebindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT felbyclaus thebindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT johansenkatjas thebindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT thygesenlisbethg thebindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT hidayatbudij bindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT weisskopfcarmen bindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT felbyclaus bindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT johansenkatjas bindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages
AT thygesenlisbethg bindingofcellulasevariantstodislocationsasemiquantitativeanalysisbasedonclsmconfocallaserscanningmicroscopyimages