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Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole g...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4667449/ https://www.ncbi.nlm.nih.gov/pubmed/26634019 http://dx.doi.org/10.1186/s40793-015-0117-7 |
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author | Yang, Guiqin Chen, Shanshan Zhou, Shungui Liu, Yongfeng |
author_facet | Yang, Guiqin Chen, Shanshan Zhou, Shungui Liu, Yongfeng |
author_sort | Yang, Guiqin |
collection | PubMed |
description | Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole genome sequence and annotation. The genome of size 3,657,100 bp contains 3229 protein-coding and 54 RNA genes, including 2 16S rRNA genes. The genome of strain GSS01(T)contains 76 predicted cytochrome genes, 24 pilus assembly protein genes and several other genes, which were proposed to be related to the reduction of insoluble Fe(III) oxides. The genes associated with the electron donors and acceptors of strain GSS01(T) were predicted in the genome. Information gained from its sequence will be relevant to the future elucidation of extracellular electron transfer mechanism during the reduction of Fe(III) oxides. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0117-7) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4667449 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46674492015-12-03 Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) Yang, Guiqin Chen, Shanshan Zhou, Shungui Liu, Yongfeng Stand Genomic Sci Extended Genome Report Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole genome sequence and annotation. The genome of size 3,657,100 bp contains 3229 protein-coding and 54 RNA genes, including 2 16S rRNA genes. The genome of strain GSS01(T)contains 76 predicted cytochrome genes, 24 pilus assembly protein genes and several other genes, which were proposed to be related to the reduction of insoluble Fe(III) oxides. The genes associated with the electron donors and acceptors of strain GSS01(T) were predicted in the genome. Information gained from its sequence will be relevant to the future elucidation of extracellular electron transfer mechanism during the reduction of Fe(III) oxides. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0117-7) contains supplementary material, which is available to authorized users. BioMed Central 2015-12-02 /pmc/articles/PMC4667449/ /pubmed/26634019 http://dx.doi.org/10.1186/s40793-015-0117-7 Text en © Yang et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Yang, Guiqin Chen, Shanshan Zhou, Shungui Liu, Yongfeng Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) |
title | Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) |
title_full | Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) |
title_fullStr | Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) |
title_full_unstemmed | Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) |
title_short | Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) |
title_sort | genome sequence of a dissimilatory fe(iii)-reducing bacterium geobacter soli type strain gss01(t) |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4667449/ https://www.ncbi.nlm.nih.gov/pubmed/26634019 http://dx.doi.org/10.1186/s40793-015-0117-7 |
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