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Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)

Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole g...

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Autores principales: Yang, Guiqin, Chen, Shanshan, Zhou, Shungui, Liu, Yongfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4667449/
https://www.ncbi.nlm.nih.gov/pubmed/26634019
http://dx.doi.org/10.1186/s40793-015-0117-7
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author Yang, Guiqin
Chen, Shanshan
Zhou, Shungui
Liu, Yongfeng
author_facet Yang, Guiqin
Chen, Shanshan
Zhou, Shungui
Liu, Yongfeng
author_sort Yang, Guiqin
collection PubMed
description Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole genome sequence and annotation. The genome of size 3,657,100 bp contains 3229 protein-coding and 54 RNA genes, including 2 16S rRNA genes. The genome of strain GSS01(T)contains 76 predicted cytochrome genes, 24 pilus assembly protein genes and several other genes, which were proposed to be related to the reduction of insoluble Fe(III) oxides. The genes associated with the electron donors and acceptors of strain GSS01(T) were predicted in the genome. Information gained from its sequence will be relevant to the future elucidation of extracellular electron transfer mechanism during the reduction of Fe(III) oxides. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0117-7) contains supplementary material, which is available to authorized users.
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spelling pubmed-46674492015-12-03 Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T) Yang, Guiqin Chen, Shanshan Zhou, Shungui Liu, Yongfeng Stand Genomic Sci Extended Genome Report Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole genome sequence and annotation. The genome of size 3,657,100 bp contains 3229 protein-coding and 54 RNA genes, including 2 16S rRNA genes. The genome of strain GSS01(T)contains 76 predicted cytochrome genes, 24 pilus assembly protein genes and several other genes, which were proposed to be related to the reduction of insoluble Fe(III) oxides. The genes associated with the electron donors and acceptors of strain GSS01(T) were predicted in the genome. Information gained from its sequence will be relevant to the future elucidation of extracellular electron transfer mechanism during the reduction of Fe(III) oxides. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0117-7) contains supplementary material, which is available to authorized users. BioMed Central 2015-12-02 /pmc/articles/PMC4667449/ /pubmed/26634019 http://dx.doi.org/10.1186/s40793-015-0117-7 Text en © Yang et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Yang, Guiqin
Chen, Shanshan
Zhou, Shungui
Liu, Yongfeng
Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
title Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
title_full Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
title_fullStr Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
title_full_unstemmed Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
title_short Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01(T)
title_sort genome sequence of a dissimilatory fe(iii)-reducing bacterium geobacter soli type strain gss01(t)
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4667449/
https://www.ncbi.nlm.nih.gov/pubmed/26634019
http://dx.doi.org/10.1186/s40793-015-0117-7
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