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DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera

Large-scale DNA barcoding provides a new technique for species identification and evaluation of relationships across various levels (populations and species) and may reveal fundamental processes in recently diverged species. Here, we analysed DNA sequence variation in the recently diverged legumes f...

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Autores principales: Bello, Abubakar, Daru, Barnabas H., Stirton, Charles H., Chimphango, Samson B. M., van der Bank, Michelle, Maurin, Olivier, Muasya, A. Muthama
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670488/
https://www.ncbi.nlm.nih.gov/pubmed/26507570
http://dx.doi.org/10.1093/aobpla/plv124
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author Bello, Abubakar
Daru, Barnabas H.
Stirton, Charles H.
Chimphango, Samson B. M.
van der Bank, Michelle
Maurin, Olivier
Muasya, A. Muthama
author_facet Bello, Abubakar
Daru, Barnabas H.
Stirton, Charles H.
Chimphango, Samson B. M.
van der Bank, Michelle
Maurin, Olivier
Muasya, A. Muthama
author_sort Bello, Abubakar
collection PubMed
description Large-scale DNA barcoding provides a new technique for species identification and evaluation of relationships across various levels (populations and species) and may reveal fundamental processes in recently diverged species. Here, we analysed DNA sequence variation in the recently diverged legumes from the Psoraleeae (Fabaceae) occurring in the Cape Floristic Region (CFR) of southern Africa to test the utility of DNA barcodes in species identification and discrimination. We further explored the phylogenetic signal on fire response trait (reseeding and resprouting) at species and generic levels. We showed that Psoraleoid legumes of the CFR exhibit a barcoding gap yielding the combination of matK and rbcLa (matK + rbcLa) data set as a better barcode than single regions. We found a high score (100 %) of correct identification of individuals to their respective genera but a very low score (<50 %) in identifying them to species. We found a considerable match (54 %) between genetic species and morphologically delimited species. We also found that different lineages showed a weak but significant phylogenetic conservatism in their response to fire as reseeders or resprouters, with more clustering of resprouters than would be expected by chance. These novel microevolutionary patterns might be acting continuously over time to produce multi-scale regularities of biodiversity. This study provides the first insight into the DNA barcoding campaign of land plants in species identification and detection of the phylogenetic signal in recently diverged lineages of the CFR.
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spelling pubmed-46704882015-12-09 DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera Bello, Abubakar Daru, Barnabas H. Stirton, Charles H. Chimphango, Samson B. M. van der Bank, Michelle Maurin, Olivier Muasya, A. Muthama AoB Plants Research Articles Large-scale DNA barcoding provides a new technique for species identification and evaluation of relationships across various levels (populations and species) and may reveal fundamental processes in recently diverged species. Here, we analysed DNA sequence variation in the recently diverged legumes from the Psoraleeae (Fabaceae) occurring in the Cape Floristic Region (CFR) of southern Africa to test the utility of DNA barcodes in species identification and discrimination. We further explored the phylogenetic signal on fire response trait (reseeding and resprouting) at species and generic levels. We showed that Psoraleoid legumes of the CFR exhibit a barcoding gap yielding the combination of matK and rbcLa (matK + rbcLa) data set as a better barcode than single regions. We found a high score (100 %) of correct identification of individuals to their respective genera but a very low score (<50 %) in identifying them to species. We found a considerable match (54 %) between genetic species and morphologically delimited species. We also found that different lineages showed a weak but significant phylogenetic conservatism in their response to fire as reseeders or resprouters, with more clustering of resprouters than would be expected by chance. These novel microevolutionary patterns might be acting continuously over time to produce multi-scale regularities of biodiversity. This study provides the first insight into the DNA barcoding campaign of land plants in species identification and detection of the phylogenetic signal in recently diverged lineages of the CFR. Oxford University Press 2015-10-27 /pmc/articles/PMC4670488/ /pubmed/26507570 http://dx.doi.org/10.1093/aobpla/plv124 Text en Published by Oxford University Press on behalf of the Annals of Botany Company. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Bello, Abubakar
Daru, Barnabas H.
Stirton, Charles H.
Chimphango, Samson B. M.
van der Bank, Michelle
Maurin, Olivier
Muasya, A. Muthama
DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera
title DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera
title_full DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera
title_fullStr DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera
title_full_unstemmed DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera
title_short DNA barcodes reveal microevolutionary signals in fire response trait in two legume genera
title_sort dna barcodes reveal microevolutionary signals in fire response trait in two legume genera
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670488/
https://www.ncbi.nlm.nih.gov/pubmed/26507570
http://dx.doi.org/10.1093/aobpla/plv124
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