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A synthetic growth switch based on controlled expression of RNA polymerase

The ability to control growth is essential for fundamental studies of bacterial physiology and biotechnological applications. We have engineered an Escherichia coli strain in which the transcription of a key component of the gene expression machinery, RNA polymerase, is under the control of an induc...

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Autores principales: Izard, Jérôme, Gomez Balderas, Cindy DC, Ropers, Delphine, Lacour, Stephan, Song, Xiaohu, Yang, Yifan, Lindner, Ariel B, Geiselmann, Johannes, de Jong, Hidde
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670729/
https://www.ncbi.nlm.nih.gov/pubmed/26596932
http://dx.doi.org/10.15252/msb.20156382
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author Izard, Jérôme
Gomez Balderas, Cindy DC
Ropers, Delphine
Lacour, Stephan
Song, Xiaohu
Yang, Yifan
Lindner, Ariel B
Geiselmann, Johannes
de Jong, Hidde
author_facet Izard, Jérôme
Gomez Balderas, Cindy DC
Ropers, Delphine
Lacour, Stephan
Song, Xiaohu
Yang, Yifan
Lindner, Ariel B
Geiselmann, Johannes
de Jong, Hidde
author_sort Izard, Jérôme
collection PubMed
description The ability to control growth is essential for fundamental studies of bacterial physiology and biotechnological applications. We have engineered an Escherichia coli strain in which the transcription of a key component of the gene expression machinery, RNA polymerase, is under the control of an inducible promoter. By changing the inducer concentration in the medium, we can adjust the RNA polymerase concentration and thereby switch bacterial growth between zero and the maximal growth rate supported by the medium. We show that our synthetic growth switch functions in a medium‐independent and reversible way, and we provide evidence that the switching phenotype arises from the ultrasensitive response of the growth rate to the concentration of RNA polymerase. We present an application of the growth switch in which both the wild‐type E. coli strain and our modified strain are endowed with the capacity to produce glycerol when growing on glucose. Cells in which growth has been switched off continue to be metabolically active and harness the energy gain to produce glycerol at a twofold higher yield than in cells with natural control of RNA polymerase expression. Remarkably, without any further optimization, the improved yield is close to the theoretical maximum computed from a flux balance model of E. coli metabolism. The proposed synthetic growth switch is a promising tool for gaining a better understanding of bacterial physiology and for applications in synthetic biology and biotechnology.
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spelling pubmed-46707292015-12-15 A synthetic growth switch based on controlled expression of RNA polymerase Izard, Jérôme Gomez Balderas, Cindy DC Ropers, Delphine Lacour, Stephan Song, Xiaohu Yang, Yifan Lindner, Ariel B Geiselmann, Johannes de Jong, Hidde Mol Syst Biol Articles The ability to control growth is essential for fundamental studies of bacterial physiology and biotechnological applications. We have engineered an Escherichia coli strain in which the transcription of a key component of the gene expression machinery, RNA polymerase, is under the control of an inducible promoter. By changing the inducer concentration in the medium, we can adjust the RNA polymerase concentration and thereby switch bacterial growth between zero and the maximal growth rate supported by the medium. We show that our synthetic growth switch functions in a medium‐independent and reversible way, and we provide evidence that the switching phenotype arises from the ultrasensitive response of the growth rate to the concentration of RNA polymerase. We present an application of the growth switch in which both the wild‐type E. coli strain and our modified strain are endowed with the capacity to produce glycerol when growing on glucose. Cells in which growth has been switched off continue to be metabolically active and harness the energy gain to produce glycerol at a twofold higher yield than in cells with natural control of RNA polymerase expression. Remarkably, without any further optimization, the improved yield is close to the theoretical maximum computed from a flux balance model of E. coli metabolism. The proposed synthetic growth switch is a promising tool for gaining a better understanding of bacterial physiology and for applications in synthetic biology and biotechnology. John Wiley and Sons Inc. 2015-11-23 /pmc/articles/PMC4670729/ /pubmed/26596932 http://dx.doi.org/10.15252/msb.20156382 Text en © 2015 The Authors. Published under the terms of the CC BY 4.0 license This is an open access article under the terms of the Creative Commons Attribution 4.0 (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Izard, Jérôme
Gomez Balderas, Cindy DC
Ropers, Delphine
Lacour, Stephan
Song, Xiaohu
Yang, Yifan
Lindner, Ariel B
Geiselmann, Johannes
de Jong, Hidde
A synthetic growth switch based on controlled expression of RNA polymerase
title A synthetic growth switch based on controlled expression of RNA polymerase
title_full A synthetic growth switch based on controlled expression of RNA polymerase
title_fullStr A synthetic growth switch based on controlled expression of RNA polymerase
title_full_unstemmed A synthetic growth switch based on controlled expression of RNA polymerase
title_short A synthetic growth switch based on controlled expression of RNA polymerase
title_sort synthetic growth switch based on controlled expression of rna polymerase
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670729/
https://www.ncbi.nlm.nih.gov/pubmed/26596932
http://dx.doi.org/10.15252/msb.20156382
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