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Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error
BACKGROUND: The influences that different programs and conditions have on error rates of single-nucleotide polymorphism (SNP) analyses are poorly understood. Using Illumina short-read sequence data generated from Listeria monocytogenes strain HPB5622, we assessed the performance of four SNP callers...
Autores principales: | Pightling, Arthur W., Petronella, Nicholas, Pagotto, Franco |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4672502/ https://www.ncbi.nlm.nih.gov/pubmed/26643440 http://dx.doi.org/10.1186/s13104-015-1689-4 |
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