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Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star?
Signs of hierarchy are prevalent in a wide range of systems in nature and society. One of the key problems is quantifying the importance of hierarchical organisation in the structure of the network representing the interactions or connections between the fundamental units of the studied system. Alth...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675073/ https://www.ncbi.nlm.nih.gov/pubmed/26657012 http://dx.doi.org/10.1038/srep17994 |
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author | Czégel, Dániel Palla, Gergely |
author_facet | Czégel, Dániel Palla, Gergely |
author_sort | Czégel, Dániel |
collection | PubMed |
description | Signs of hierarchy are prevalent in a wide range of systems in nature and society. One of the key problems is quantifying the importance of hierarchical organisation in the structure of the network representing the interactions or connections between the fundamental units of the studied system. Although a number of notable methods are already available, their vast majority is treating all directed acyclic graphs as already maximally hierarchical. Here we propose a hierarchy measure based on random walks on the network. The novelty of our approach is that directed trees corresponding to multi level pyramidal structures obtain higher hierarchy scores compared to directed chains and directed stars. Furthermore, in the thermodynamic limit the hierarchy measure of regular trees is converging to a well defined limit depending only on the branching number. When applied to real networks, our method is computationally very effective, as the result can be evaluated with arbitrary precision by subsequent multiplications of the transition matrix describing the random walk process. In addition, the tests on real world networks provided very intuitive results, e.g., the trophic levels obtained from our approach on a food web were highly consistent with former results from ecology. |
format | Online Article Text |
id | pubmed-4675073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-46750732015-12-16 Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? Czégel, Dániel Palla, Gergely Sci Rep Article Signs of hierarchy are prevalent in a wide range of systems in nature and society. One of the key problems is quantifying the importance of hierarchical organisation in the structure of the network representing the interactions or connections between the fundamental units of the studied system. Although a number of notable methods are already available, their vast majority is treating all directed acyclic graphs as already maximally hierarchical. Here we propose a hierarchy measure based on random walks on the network. The novelty of our approach is that directed trees corresponding to multi level pyramidal structures obtain higher hierarchy scores compared to directed chains and directed stars. Furthermore, in the thermodynamic limit the hierarchy measure of regular trees is converging to a well defined limit depending only on the branching number. When applied to real networks, our method is computationally very effective, as the result can be evaluated with arbitrary precision by subsequent multiplications of the transition matrix describing the random walk process. In addition, the tests on real world networks provided very intuitive results, e.g., the trophic levels obtained from our approach on a food web were highly consistent with former results from ecology. Nature Publishing Group 2015-12-10 /pmc/articles/PMC4675073/ /pubmed/26657012 http://dx.doi.org/10.1038/srep17994 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Czégel, Dániel Palla, Gergely Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? |
title | Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? |
title_full | Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? |
title_fullStr | Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? |
title_full_unstemmed | Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? |
title_short | Random walk hierarchy measure: What is more hierarchical, a chain, a tree or a star? |
title_sort | random walk hierarchy measure: what is more hierarchical, a chain, a tree or a star? |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675073/ https://www.ncbi.nlm.nih.gov/pubmed/26657012 http://dx.doi.org/10.1038/srep17994 |
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