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The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network

The challenges facing biobanks are changing from simple collections of materials to quality-assured fit-for-purpose clinically annotated samples. As a result, informatics awareness and capabilities of a biobank are now intrinsically related to quality. A biobank may be considered a data repository,...

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Autores principales: Quinlan, Philip R., Groves, Martin, Jordan, Lee B., Stobart, Hilary, Purdie, Colin A., Thompson, Alastair M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Mary Ann Liebert, Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675179/
https://www.ncbi.nlm.nih.gov/pubmed/26418270
http://dx.doi.org/10.1089/bio.2014.0099
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author Quinlan, Philip R.
Groves, Martin
Jordan, Lee B.
Stobart, Hilary
Purdie, Colin A.
Thompson, Alastair M
author_facet Quinlan, Philip R.
Groves, Martin
Jordan, Lee B.
Stobart, Hilary
Purdie, Colin A.
Thompson, Alastair M
author_sort Quinlan, Philip R.
collection PubMed
description The challenges facing biobanks are changing from simple collections of materials to quality-assured fit-for-purpose clinically annotated samples. As a result, informatics awareness and capabilities of a biobank are now intrinsically related to quality. A biobank may be considered a data repository, in the form of raw data (the unprocessed samples), data surrounding the samples (processing and storage conditions), supplementary data (such as clinical annotations), and an increasing ethical requirement for biobanks to have a mechanism for researchers to return their data. The informatics capabilities of a biobank are no longer simply knowing sample locations; instead the capabilities will become a distinguishing factor in the ability of a biobank to provide appropriate samples. There is an increasing requirement for biobanking systems (whether in-house or commercially sourced) to ensure the informatics systems stay apace with the changes being experienced by the biobanking community. In turn, there is a requirement for the biobanks to have a clear informatics policy and directive that is embedded into the wider decision making process. As an example, the Breast Cancer Campaign Tissue Bank in the UK was a collaboration between four individual and diverse biobanks in the UK, and an informatics platform has been developed to address the challenges of running a distributed network. From developing such a system there are key observations about what can or cannot be achieved by informatics in isolation. This article will highlight some of the lessons learned during this development process.
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spelling pubmed-46751792015-12-15 The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network Quinlan, Philip R. Groves, Martin Jordan, Lee B. Stobart, Hilary Purdie, Colin A. Thompson, Alastair M Biopreserv Biobank Original Articles The challenges facing biobanks are changing from simple collections of materials to quality-assured fit-for-purpose clinically annotated samples. As a result, informatics awareness and capabilities of a biobank are now intrinsically related to quality. A biobank may be considered a data repository, in the form of raw data (the unprocessed samples), data surrounding the samples (processing and storage conditions), supplementary data (such as clinical annotations), and an increasing ethical requirement for biobanks to have a mechanism for researchers to return their data. The informatics capabilities of a biobank are no longer simply knowing sample locations; instead the capabilities will become a distinguishing factor in the ability of a biobank to provide appropriate samples. There is an increasing requirement for biobanking systems (whether in-house or commercially sourced) to ensure the informatics systems stay apace with the changes being experienced by the biobanking community. In turn, there is a requirement for the biobanks to have a clear informatics policy and directive that is embedded into the wider decision making process. As an example, the Breast Cancer Campaign Tissue Bank in the UK was a collaboration between four individual and diverse biobanks in the UK, and an informatics platform has been developed to address the challenges of running a distributed network. From developing such a system there are key observations about what can or cannot be achieved by informatics in isolation. This article will highlight some of the lessons learned during this development process. Mary Ann Liebert, Inc. 2015-10-01 /pmc/articles/PMC4675179/ /pubmed/26418270 http://dx.doi.org/10.1089/bio.2014.0099 Text en © The Author(s) 2015; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited.
spellingShingle Original Articles
Quinlan, Philip R.
Groves, Martin
Jordan, Lee B.
Stobart, Hilary
Purdie, Colin A.
Thompson, Alastair M
The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network
title The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network
title_full The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network
title_fullStr The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network
title_full_unstemmed The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network
title_short The Informatics Challenges Facing Biobanks: A Perspective from a United Kingdom Biobanking Network
title_sort informatics challenges facing biobanks: a perspective from a united kingdom biobanking network
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675179/
https://www.ncbi.nlm.nih.gov/pubmed/26418270
http://dx.doi.org/10.1089/bio.2014.0099
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