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A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project

The Genotype-Tissue Expression (GTEx) project, sponsored by the NIH Common Fund, was established to study the correlation between human genetic variation and tissue-specific gene expression in non-diseased individuals. A significant challenge was the collection of high-quality biospecimens for exten...

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Autores principales: Carithers, Latarsha J., Ardlie, Kristin, Barcus, Mary, Branton, Philip A., Britton, Angela, Buia, Stephen A., Compton, Carolyn C., DeLuca, David S., Peter-Demchok, Joanne, Gelfand, Ellen T., Guan, Ping, Korzeniewski, Greg E., Lockhart, Nicole C., Rabiner, Chana A., Rao, Abhi K., Robinson, Karna L., Roche, Nancy V., Sawyer, Sherilyn J., Segrè, Ayellet V., Shive, Charles E., Smith, Anna M., Sobin, Leslie H., Undale, Anita H., Valentino, Kimberly M., Vaught, Jim, Young, Taylor R., Moore, Helen M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Mary Ann Liebert, Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675181/
https://www.ncbi.nlm.nih.gov/pubmed/26484571
http://dx.doi.org/10.1089/bio.2015.0032
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author Carithers, Latarsha J.
Ardlie, Kristin
Barcus, Mary
Branton, Philip A.
Britton, Angela
Buia, Stephen A.
Compton, Carolyn C.
DeLuca, David S.
Peter-Demchok, Joanne
Gelfand, Ellen T.
Guan, Ping
Korzeniewski, Greg E.
Lockhart, Nicole C.
Rabiner, Chana A.
Rao, Abhi K.
Robinson, Karna L.
Roche, Nancy V.
Sawyer, Sherilyn J.
Segrè, Ayellet V.
Shive, Charles E.
Smith, Anna M.
Sobin, Leslie H.
Undale, Anita H.
Valentino, Kimberly M.
Vaught, Jim
Young, Taylor R.
Moore, Helen M.
author_facet Carithers, Latarsha J.
Ardlie, Kristin
Barcus, Mary
Branton, Philip A.
Britton, Angela
Buia, Stephen A.
Compton, Carolyn C.
DeLuca, David S.
Peter-Demchok, Joanne
Gelfand, Ellen T.
Guan, Ping
Korzeniewski, Greg E.
Lockhart, Nicole C.
Rabiner, Chana A.
Rao, Abhi K.
Robinson, Karna L.
Roche, Nancy V.
Sawyer, Sherilyn J.
Segrè, Ayellet V.
Shive, Charles E.
Smith, Anna M.
Sobin, Leslie H.
Undale, Anita H.
Valentino, Kimberly M.
Vaught, Jim
Young, Taylor R.
Moore, Helen M.
author_sort Carithers, Latarsha J.
collection PubMed
description The Genotype-Tissue Expression (GTEx) project, sponsored by the NIH Common Fund, was established to study the correlation between human genetic variation and tissue-specific gene expression in non-diseased individuals. A significant challenge was the collection of high-quality biospecimens for extensive genomic analyses. Here we describe how a successful infrastructure for biospecimen procurement was developed and implemented by multiple research partners to support the prospective collection, annotation, and distribution of blood, tissues, and cell lines for the GTEx project. Other research projects can follow this model and form beneficial partnerships with rapid autopsy and organ procurement organizations to collect high quality biospecimens and associated clinical data for genomic studies. Biospecimens, clinical and genomic data, and Standard Operating Procedures guiding biospecimen collection for the GTEx project are available to the research community.
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spelling pubmed-46751812015-12-15 A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project Carithers, Latarsha J. Ardlie, Kristin Barcus, Mary Branton, Philip A. Britton, Angela Buia, Stephen A. Compton, Carolyn C. DeLuca, David S. Peter-Demchok, Joanne Gelfand, Ellen T. Guan, Ping Korzeniewski, Greg E. Lockhart, Nicole C. Rabiner, Chana A. Rao, Abhi K. Robinson, Karna L. Roche, Nancy V. Sawyer, Sherilyn J. Segrè, Ayellet V. Shive, Charles E. Smith, Anna M. Sobin, Leslie H. Undale, Anita H. Valentino, Kimberly M. Vaught, Jim Young, Taylor R. Moore, Helen M. Biopreserv Biobank Original Articles The Genotype-Tissue Expression (GTEx) project, sponsored by the NIH Common Fund, was established to study the correlation between human genetic variation and tissue-specific gene expression in non-diseased individuals. A significant challenge was the collection of high-quality biospecimens for extensive genomic analyses. Here we describe how a successful infrastructure for biospecimen procurement was developed and implemented by multiple research partners to support the prospective collection, annotation, and distribution of blood, tissues, and cell lines for the GTEx project. Other research projects can follow this model and form beneficial partnerships with rapid autopsy and organ procurement organizations to collect high quality biospecimens and associated clinical data for genomic studies. Biospecimens, clinical and genomic data, and Standard Operating Procedures guiding biospecimen collection for the GTEx project are available to the research community. Mary Ann Liebert, Inc. 2015-10-01 /pmc/articles/PMC4675181/ /pubmed/26484571 http://dx.doi.org/10.1089/bio.2015.0032 Text en © The Author(s) 2015; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Original Articles
Carithers, Latarsha J.
Ardlie, Kristin
Barcus, Mary
Branton, Philip A.
Britton, Angela
Buia, Stephen A.
Compton, Carolyn C.
DeLuca, David S.
Peter-Demchok, Joanne
Gelfand, Ellen T.
Guan, Ping
Korzeniewski, Greg E.
Lockhart, Nicole C.
Rabiner, Chana A.
Rao, Abhi K.
Robinson, Karna L.
Roche, Nancy V.
Sawyer, Sherilyn J.
Segrè, Ayellet V.
Shive, Charles E.
Smith, Anna M.
Sobin, Leslie H.
Undale, Anita H.
Valentino, Kimberly M.
Vaught, Jim
Young, Taylor R.
Moore, Helen M.
A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
title A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
title_full A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
title_fullStr A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
title_full_unstemmed A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
title_short A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project
title_sort novel approach to high-quality postmortem tissue procurement: the gtex project
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675181/
https://www.ncbi.nlm.nih.gov/pubmed/26484571
http://dx.doi.org/10.1089/bio.2015.0032
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