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Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes
[Image: see text] Deuterium line shape analysis from mobile C–D and C–CD(3) groups has emerged as a particularly useful tool for studying dynamics in the solid state. The theoretical models devised so far consist typically of sets of independent dynamic modes. Each such mode is simple and usually ca...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676681/ https://www.ncbi.nlm.nih.gov/pubmed/26402431 http://dx.doi.org/10.1021/acs.jpcb.5b07434 |
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author | Meirovitch, Eva Liang, Zhichun Freed, Jack H. |
author_facet | Meirovitch, Eva Liang, Zhichun Freed, Jack H. |
author_sort | Meirovitch, Eva |
collection | PubMed |
description | [Image: see text] Deuterium line shape analysis from mobile C–D and C–CD(3) groups has emerged as a particularly useful tool for studying dynamics in the solid state. The theoretical models devised so far consist typically of sets of independent dynamic modes. Each such mode is simple and usually case-specific. In this scenario, model improvement entails adding yet another mode (thereby changing the overall model), comparison of different cases is difficult, and ambiguity is unavoidable. We recently developed the microscopic order macroscopic disorder (MOMD) approach as a single-mode alternative. In MOMD, the local spatial restrictions are expressed by an anisotropic potential, the local motion by a diffusion tensor, and the local molecular geometry by relative (magnetic and model-related) tensor orientations, all of adjustable symmetry. This approach provides a consistent method of analysis, thus resolving the issues above. In this study, we apply MOMD to PS-adsorbed LKα14 peptide and dimethylammonium tetraphenylborate (C–CD(3) and N–CD(3) dynamics, respectively), as well as HhaI methyltransferase target DNA and phase III of benzene-6-hexanoate (C–D dynamics). The success with fitting these four disparate cases, as well as the two cases in the previous report, demonstrates the generality of this MOMD-based approach. In this study, C–D and C–CD(3) are both found to execute axial diffusion (rates R(⊥) and R(∥)) in the presence of a rhombic potential given by the L = 2 spherical harmonics (coefficients c(0)(2) and c(2)(2)). R(⊥) (R(∥)) is in the 10(2)–10(3) (10(4)–10(5)) s(–1) range, and c(0)(2) and c(2)(2) are on the order of 2–3 k(B)T. Specific parameter values are determined for each mobile site. The diffusion and quadrupolar tensors are tilted at either 120° (consistent with trans–gauche isomerization) or nearly 110.5° (consistent with methyl exchange). Future prospects include extension of the MOMD formalism to include MAS, and application to (15)N and (13)C nuclei. |
format | Online Article Text |
id | pubmed-4676681 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-46766812015-12-15 Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes Meirovitch, Eva Liang, Zhichun Freed, Jack H. J Phys Chem B [Image: see text] Deuterium line shape analysis from mobile C–D and C–CD(3) groups has emerged as a particularly useful tool for studying dynamics in the solid state. The theoretical models devised so far consist typically of sets of independent dynamic modes. Each such mode is simple and usually case-specific. In this scenario, model improvement entails adding yet another mode (thereby changing the overall model), comparison of different cases is difficult, and ambiguity is unavoidable. We recently developed the microscopic order macroscopic disorder (MOMD) approach as a single-mode alternative. In MOMD, the local spatial restrictions are expressed by an anisotropic potential, the local motion by a diffusion tensor, and the local molecular geometry by relative (magnetic and model-related) tensor orientations, all of adjustable symmetry. This approach provides a consistent method of analysis, thus resolving the issues above. In this study, we apply MOMD to PS-adsorbed LKα14 peptide and dimethylammonium tetraphenylborate (C–CD(3) and N–CD(3) dynamics, respectively), as well as HhaI methyltransferase target DNA and phase III of benzene-6-hexanoate (C–D dynamics). The success with fitting these four disparate cases, as well as the two cases in the previous report, demonstrates the generality of this MOMD-based approach. In this study, C–D and C–CD(3) are both found to execute axial diffusion (rates R(⊥) and R(∥)) in the presence of a rhombic potential given by the L = 2 spherical harmonics (coefficients c(0)(2) and c(2)(2)). R(⊥) (R(∥)) is in the 10(2)–10(3) (10(4)–10(5)) s(–1) range, and c(0)(2) and c(2)(2) are on the order of 2–3 k(B)T. Specific parameter values are determined for each mobile site. The diffusion and quadrupolar tensors are tilted at either 120° (consistent with trans–gauche isomerization) or nearly 110.5° (consistent with methyl exchange). Future prospects include extension of the MOMD formalism to include MAS, and application to (15)N and (13)C nuclei. American Chemical Society 2015-09-24 2015-11-05 /pmc/articles/PMC4676681/ /pubmed/26402431 http://dx.doi.org/10.1021/acs.jpcb.5b07434 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Meirovitch, Eva Liang, Zhichun Freed, Jack H. Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes |
title | Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes |
title_full | Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes |
title_fullStr | Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes |
title_full_unstemmed | Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes |
title_short | Protein Dynamics in the Solid State from (2)H NMR Line Shape Analysis. II. MOMD Applied to C–D and C–CD(3) Probes |
title_sort | protein dynamics in the solid state from (2)h nmr line shape analysis. ii. momd applied to c–d and c–cd(3) probes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676681/ https://www.ncbi.nlm.nih.gov/pubmed/26402431 http://dx.doi.org/10.1021/acs.jpcb.5b07434 |
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