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An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density
BACKGROUND: Our aim was to estimate the genetic parameters for the direct genetic effect (DGE) and indirect genetic effects (IGE) on adult body weight in the Pacific white shrimp. IGE is the heritable effect of an individual on the trait values of its group mates. METHODS: To examine IGE on body wei...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678730/ https://www.ncbi.nlm.nih.gov/pubmed/26667448 http://dx.doi.org/10.1186/s12711-015-0164-y |
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author | Luan, Sheng Luo, Kun Chai, Zhan Cao, Baoxiang Meng, Xianhong Lu, Xia Liu, Ning Xu, Shengyu Kong, Jie |
author_facet | Luan, Sheng Luo, Kun Chai, Zhan Cao, Baoxiang Meng, Xianhong Lu, Xia Liu, Ning Xu, Shengyu Kong, Jie |
author_sort | Luan, Sheng |
collection | PubMed |
description | BACKGROUND: Our aim was to estimate the genetic parameters for the direct genetic effect (DGE) and indirect genetic effects (IGE) on adult body weight in the Pacific white shrimp. IGE is the heritable effect of an individual on the trait values of its group mates. METHODS: To examine IGE on body weight, 4725 shrimp from 105 tagged families were tested in multiple small test groups (MSTG). Each family was separated into three groups (15 shrimp per group) that were randomly assigned to 105 concrete tanks with shrimp from two other families. To estimate breeding values, one large test group (OLTG) in a 300 m(2) circular concrete tank was used for the communal rearing of 8398 individuals from 105 families. Body weight was measured after a growth-test period of more than 200 days. Variance components for body weight in the MSTG programs were estimated using an animal model excluding or including IGE whereas variance components in the OLTG programs were estimated using a conventional animal model that included only DGE. The correlation of DGE between MSTG and OLTG programs was estimated by a two-trait animal model that included or excluded IGE. RESULTS: Heritability estimates for body weight from the conventional animal model in MSTG and OLTG programs were 0.26 ± 0.13 and 0.40 ± 0.06, respectively. The log likelihood ratio test revealed significant IGE on body weight. Total heritable variance was the sum of direct genetic variance (43.5 %), direct–indirect genetic covariance (2.1 %), and indirect genetic variance (54.4 %). It represented 73 % of the phenotypic variance and was more than two-fold greater than that (32 %) obtained by using a classical heritability model for body weight. Correlations of DGE on body weight between MSTG and OLTG programs were intermediate regardless of whether IGE were included or not in the model. CONCLUSIONS: Our results suggest that social interactions contributed to a large part of the heritable variation in body weight. Small and non-significant direct–indirect genetic correlations implied that neutral or slightly cooperative heritable interactions, rather than competition, were dominant in this population but this may be due to the low rearing density. |
format | Online Article Text |
id | pubmed-4678730 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46787302015-12-16 An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density Luan, Sheng Luo, Kun Chai, Zhan Cao, Baoxiang Meng, Xianhong Lu, Xia Liu, Ning Xu, Shengyu Kong, Jie Genet Sel Evol Research Article BACKGROUND: Our aim was to estimate the genetic parameters for the direct genetic effect (DGE) and indirect genetic effects (IGE) on adult body weight in the Pacific white shrimp. IGE is the heritable effect of an individual on the trait values of its group mates. METHODS: To examine IGE on body weight, 4725 shrimp from 105 tagged families were tested in multiple small test groups (MSTG). Each family was separated into three groups (15 shrimp per group) that were randomly assigned to 105 concrete tanks with shrimp from two other families. To estimate breeding values, one large test group (OLTG) in a 300 m(2) circular concrete tank was used for the communal rearing of 8398 individuals from 105 families. Body weight was measured after a growth-test period of more than 200 days. Variance components for body weight in the MSTG programs were estimated using an animal model excluding or including IGE whereas variance components in the OLTG programs were estimated using a conventional animal model that included only DGE. The correlation of DGE between MSTG and OLTG programs was estimated by a two-trait animal model that included or excluded IGE. RESULTS: Heritability estimates for body weight from the conventional animal model in MSTG and OLTG programs were 0.26 ± 0.13 and 0.40 ± 0.06, respectively. The log likelihood ratio test revealed significant IGE on body weight. Total heritable variance was the sum of direct genetic variance (43.5 %), direct–indirect genetic covariance (2.1 %), and indirect genetic variance (54.4 %). It represented 73 % of the phenotypic variance and was more than two-fold greater than that (32 %) obtained by using a classical heritability model for body weight. Correlations of DGE on body weight between MSTG and OLTG programs were intermediate regardless of whether IGE were included or not in the model. CONCLUSIONS: Our results suggest that social interactions contributed to a large part of the heritable variation in body weight. Small and non-significant direct–indirect genetic correlations implied that neutral or slightly cooperative heritable interactions, rather than competition, were dominant in this population but this may be due to the low rearing density. BioMed Central 2015-12-14 /pmc/articles/PMC4678730/ /pubmed/26667448 http://dx.doi.org/10.1186/s12711-015-0164-y Text en © Luan et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Luan, Sheng Luo, Kun Chai, Zhan Cao, Baoxiang Meng, Xianhong Lu, Xia Liu, Ning Xu, Shengyu Kong, Jie An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density |
title | An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density |
title_full | An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density |
title_fullStr | An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density |
title_full_unstemmed | An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density |
title_short | An analysis of indirect genetic effects on adult body weight of the Pacific white shrimp Litopenaeus vannamei at low rearing density |
title_sort | analysis of indirect genetic effects on adult body weight of the pacific white shrimp litopenaeus vannamei at low rearing density |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678730/ https://www.ncbi.nlm.nih.gov/pubmed/26667448 http://dx.doi.org/10.1186/s12711-015-0164-y |
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