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First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea
The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despi...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678784/ https://www.ncbi.nlm.nih.gov/pubmed/26529193 http://dx.doi.org/10.1016/j.gpb.2015.06.004 |
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author | Antunes, André Alam, Intikhab Simões, Marta Filipa Daniels, Camille Ferreira, Ari J.S. Siam, Rania El-Dorry, Hamza Bajic, Vladimir B. |
author_facet | Antunes, André Alam, Intikhab Simões, Marta Filipa Daniels, Camille Ferreira, Ari J.S. Siam, Rania El-Dorry, Hamza Bajic, Vladimir B. |
author_sort | Antunes, André |
collection | PubMed |
description | The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despite a recent increase of studies focusing on these unusual biotopes, their viral communities remain unexplored. The current survey explores four metagenomic datasets obtained from different brine–seawater interface samples, focusing specifically on the diversity of their viral communities. Data analysis confirmed that the particle-attached viral communities present in the brine–seawater interfaces were diverse and generally dominated by Caudovirales, yet appearing distinct from sample to sample. With a level of caution, we report the unexpected finding of Phycodnaviridae, which infects algae and plants, and trace amounts of insect-infecting Iridoviridae. Results from Kebrit Deep revealed stratification in the viral communities present in the interface: the upper-interface was enriched with viruses associated with typical marine bacteria, while the lower-interface was enriched with haloviruses and halophages. These results provide first insights into the unexplored viral communities present in deep-sea brines of the Red Sea, representing one of the first steps for ongoing and future sampling efforts and studies. |
format | Online Article Text |
id | pubmed-4678784 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-46787842016-01-06 First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea Antunes, André Alam, Intikhab Simões, Marta Filipa Daniels, Camille Ferreira, Ari J.S. Siam, Rania El-Dorry, Hamza Bajic, Vladimir B. Genomics Proteomics Bioinformatics Original Research The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despite a recent increase of studies focusing on these unusual biotopes, their viral communities remain unexplored. The current survey explores four metagenomic datasets obtained from different brine–seawater interface samples, focusing specifically on the diversity of their viral communities. Data analysis confirmed that the particle-attached viral communities present in the brine–seawater interfaces were diverse and generally dominated by Caudovirales, yet appearing distinct from sample to sample. With a level of caution, we report the unexpected finding of Phycodnaviridae, which infects algae and plants, and trace amounts of insect-infecting Iridoviridae. Results from Kebrit Deep revealed stratification in the viral communities present in the interface: the upper-interface was enriched with viruses associated with typical marine bacteria, while the lower-interface was enriched with haloviruses and halophages. These results provide first insights into the unexplored viral communities present in deep-sea brines of the Red Sea, representing one of the first steps for ongoing and future sampling efforts and studies. Elsevier 2015-10 2015-10-31 /pmc/articles/PMC4678784/ /pubmed/26529193 http://dx.doi.org/10.1016/j.gpb.2015.06.004 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Original Research Antunes, André Alam, Intikhab Simões, Marta Filipa Daniels, Camille Ferreira, Ari J.S. Siam, Rania El-Dorry, Hamza Bajic, Vladimir B. First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea |
title | First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea |
title_full | First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea |
title_fullStr | First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea |
title_full_unstemmed | First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea |
title_short | First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea |
title_sort | first insights into the viral communities of the deep-sea anoxic brines of the red sea |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678784/ https://www.ncbi.nlm.nih.gov/pubmed/26529193 http://dx.doi.org/10.1016/j.gpb.2015.06.004 |
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