Cargando…
Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification
Here, we propose a new approach to defining nerve “cell types” in reaction to recent advances in single cell analysis. Among cells previously thought to be equivalent, considerable differences in global gene expression and biased tendencies among differing developmental fates have been demonstrated...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679859/ https://www.ncbi.nlm.nih.gov/pubmed/26733833 http://dx.doi.org/10.3389/fnbeh.2015.00342 |
_version_ | 1782405596017852416 |
---|---|
author | Tabansky, Inna Stern, Joel N. H. Pfaff, Donald W. |
author_facet | Tabansky, Inna Stern, Joel N. H. Pfaff, Donald W. |
author_sort | Tabansky, Inna |
collection | PubMed |
description | Here, we propose a new approach to defining nerve “cell types” in reaction to recent advances in single cell analysis. Among cells previously thought to be equivalent, considerable differences in global gene expression and biased tendencies among differing developmental fates have been demonstrated within multiple lineages. The model of classifying cells into distinct types thus has to be revised to account for this intrinsic variability. A “cell type” could be a group of cells that possess similar, but not necessarily identical properties, variable within a spectrum of epigenetic adjustments that permit its developmental path toward a specific function to be achieved. Thus, the definition of a cell type is becoming more similar to the definition of a species: sharing essential properties with other members of its group, but permitting a certain amount of deviation in aspects that do not seriously impact function. This approach accommodates, even embraces the spectrum of natural variation found in various cell populations and consequently avoids the fallacy of false equivalence. For example, developing neurons will react to their microenvironments with epigenetic changes resulting in slight changes in gene expression and morphology. Addressing the new questions implied here will have significant implications for developmental neurobiology. |
format | Online Article Text |
id | pubmed-4679859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-46798592016-01-05 Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification Tabansky, Inna Stern, Joel N. H. Pfaff, Donald W. Front Behav Neurosci Neuroscience Here, we propose a new approach to defining nerve “cell types” in reaction to recent advances in single cell analysis. Among cells previously thought to be equivalent, considerable differences in global gene expression and biased tendencies among differing developmental fates have been demonstrated within multiple lineages. The model of classifying cells into distinct types thus has to be revised to account for this intrinsic variability. A “cell type” could be a group of cells that possess similar, but not necessarily identical properties, variable within a spectrum of epigenetic adjustments that permit its developmental path toward a specific function to be achieved. Thus, the definition of a cell type is becoming more similar to the definition of a species: sharing essential properties with other members of its group, but permitting a certain amount of deviation in aspects that do not seriously impact function. This approach accommodates, even embraces the spectrum of natural variation found in various cell populations and consequently avoids the fallacy of false equivalence. For example, developing neurons will react to their microenvironments with epigenetic changes resulting in slight changes in gene expression and morphology. Addressing the new questions implied here will have significant implications for developmental neurobiology. Frontiers Media S.A. 2015-12-16 /pmc/articles/PMC4679859/ /pubmed/26733833 http://dx.doi.org/10.3389/fnbeh.2015.00342 Text en Copyright © 2015 Tabansky, Stern and Pfaff. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution and reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Tabansky, Inna Stern, Joel N. H. Pfaff, Donald W. Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification |
title | Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification |
title_full | Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification |
title_fullStr | Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification |
title_full_unstemmed | Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification |
title_short | Implications of Epigenetic Variability within a Cell Population for “Cell Type” Classification |
title_sort | implications of epigenetic variability within a cell population for “cell type” classification |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679859/ https://www.ncbi.nlm.nih.gov/pubmed/26733833 http://dx.doi.org/10.3389/fnbeh.2015.00342 |
work_keys_str_mv | AT tabanskyinna implicationsofepigeneticvariabilitywithinacellpopulationforcelltypeclassification AT sternjoelnh implicationsofepigeneticvariabilitywithinacellpopulationforcelltypeclassification AT pfaffdonaldw implicationsofepigeneticvariabilitywithinacellpopulationforcelltypeclassification |