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Reproducibility of telomere length assessment: an international collaborative study

Background: Telomere length is a putative biomarker of ageing, morbidity and mortality. Its application is hampered by lack of widely applicable reference ranges and uncertainty regarding the present limits of measurement reproducibility within and between laboratories. Methods: We instigated an int...

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Autores principales: Martin-Ruiz, Carmen M, Baird, Duncan, Roger, Laureline, Boukamp, Petra, Krunic, Damir, Cawthon, Richard, Dokter, Martin M, van der Harst, Pim, Bekaert, Sofie, de Meyer, Tim, Roos, Goran, Svenson, Ulrika, Codd, Veryan, Samani, Nilesh J, McGlynn, Liane, Shiels, Paul G, Pooley, Karen A, Dunning, Alison M, Cooper, Rachel, Wong, Andrew, Kingston, Andrew, von Zglinicki, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681105/
https://www.ncbi.nlm.nih.gov/pubmed/25239152
http://dx.doi.org/10.1093/ije/dyu191
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author Martin-Ruiz, Carmen M
Baird, Duncan
Roger, Laureline
Boukamp, Petra
Krunic, Damir
Cawthon, Richard
Dokter, Martin M
van der Harst, Pim
Bekaert, Sofie
de Meyer, Tim
Roos, Goran
Svenson, Ulrika
Codd, Veryan
Samani, Nilesh J
McGlynn, Liane
Shiels, Paul G
Pooley, Karen A
Dunning, Alison M
Cooper, Rachel
Wong, Andrew
Kingston, Andrew
von Zglinicki, Thomas
author_facet Martin-Ruiz, Carmen M
Baird, Duncan
Roger, Laureline
Boukamp, Petra
Krunic, Damir
Cawthon, Richard
Dokter, Martin M
van der Harst, Pim
Bekaert, Sofie
de Meyer, Tim
Roos, Goran
Svenson, Ulrika
Codd, Veryan
Samani, Nilesh J
McGlynn, Liane
Shiels, Paul G
Pooley, Karen A
Dunning, Alison M
Cooper, Rachel
Wong, Andrew
Kingston, Andrew
von Zglinicki, Thomas
author_sort Martin-Ruiz, Carmen M
collection PubMed
description Background: Telomere length is a putative biomarker of ageing, morbidity and mortality. Its application is hampered by lack of widely applicable reference ranges and uncertainty regarding the present limits of measurement reproducibility within and between laboratories. Methods: We instigated an international collaborative study of telomere length assessment: 10 different laboratories, employing 3 different techniques [Southern blotting, single telomere length analysis (STELA) and real-time quantitative PCR (qPCR)] performed two rounds of fully blinded measurements on 10 human DNA samples per round to enable unbiased assessment of intra- and inter-batch variation between laboratories and techniques. Results: Absolute results from different laboratories differed widely and could thus not be compared directly, but rankings of relative telomere lengths were highly correlated (correlation coefficients of 0.63–0.99). Intra-technique correlations were similar for Southern blotting and qPCR and were stronger than inter-technique ones. However, inter-laboratory coefficients of variation (CVs) averaged about 10% for Southern blotting and STELA and more than 20% for qPCR. This difference was compensated for by a higher dynamic range for the qPCR method as shown by equal variance after z-scoring. Technical variation per laboratory, measured as median of intra- and inter-batch CVs, ranged from 1.4% to 9.5%, with differences between laboratories only marginally significant (P = 0.06). Gel-based and PCR-based techniques were not different in accuracy. Conclusions: Intra- and inter-laboratory technical variation severely limits the usefulness of data pooling and excludes sharing of reference ranges between laboratories. We propose to establish a common set of physical telomere length standards to improve comparability of telomere length estimates between laboratories.
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spelling pubmed-46811052015-12-16 Reproducibility of telomere length assessment: an international collaborative study Martin-Ruiz, Carmen M Baird, Duncan Roger, Laureline Boukamp, Petra Krunic, Damir Cawthon, Richard Dokter, Martin M van der Harst, Pim Bekaert, Sofie de Meyer, Tim Roos, Goran Svenson, Ulrika Codd, Veryan Samani, Nilesh J McGlynn, Liane Shiels, Paul G Pooley, Karen A Dunning, Alison M Cooper, Rachel Wong, Andrew Kingston, Andrew von Zglinicki, Thomas Int J Epidemiol Methodology Background: Telomere length is a putative biomarker of ageing, morbidity and mortality. Its application is hampered by lack of widely applicable reference ranges and uncertainty regarding the present limits of measurement reproducibility within and between laboratories. Methods: We instigated an international collaborative study of telomere length assessment: 10 different laboratories, employing 3 different techniques [Southern blotting, single telomere length analysis (STELA) and real-time quantitative PCR (qPCR)] performed two rounds of fully blinded measurements on 10 human DNA samples per round to enable unbiased assessment of intra- and inter-batch variation between laboratories and techniques. Results: Absolute results from different laboratories differed widely and could thus not be compared directly, but rankings of relative telomere lengths were highly correlated (correlation coefficients of 0.63–0.99). Intra-technique correlations were similar for Southern blotting and qPCR and were stronger than inter-technique ones. However, inter-laboratory coefficients of variation (CVs) averaged about 10% for Southern blotting and STELA and more than 20% for qPCR. This difference was compensated for by a higher dynamic range for the qPCR method as shown by equal variance after z-scoring. Technical variation per laboratory, measured as median of intra- and inter-batch CVs, ranged from 1.4% to 9.5%, with differences between laboratories only marginally significant (P = 0.06). Gel-based and PCR-based techniques were not different in accuracy. Conclusions: Intra- and inter-laboratory technical variation severely limits the usefulness of data pooling and excludes sharing of reference ranges between laboratories. We propose to establish a common set of physical telomere length standards to improve comparability of telomere length estimates between laboratories. Oxford University Press 2015-10 2014-09-19 /pmc/articles/PMC4681105/ /pubmed/25239152 http://dx.doi.org/10.1093/ije/dyu191 Text en © The Author 2014. Published by Oxford University Press on behalf of the International Epidemiological Association http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methodology
Martin-Ruiz, Carmen M
Baird, Duncan
Roger, Laureline
Boukamp, Petra
Krunic, Damir
Cawthon, Richard
Dokter, Martin M
van der Harst, Pim
Bekaert, Sofie
de Meyer, Tim
Roos, Goran
Svenson, Ulrika
Codd, Veryan
Samani, Nilesh J
McGlynn, Liane
Shiels, Paul G
Pooley, Karen A
Dunning, Alison M
Cooper, Rachel
Wong, Andrew
Kingston, Andrew
von Zglinicki, Thomas
Reproducibility of telomere length assessment: an international collaborative study
title Reproducibility of telomere length assessment: an international collaborative study
title_full Reproducibility of telomere length assessment: an international collaborative study
title_fullStr Reproducibility of telomere length assessment: an international collaborative study
title_full_unstemmed Reproducibility of telomere length assessment: an international collaborative study
title_short Reproducibility of telomere length assessment: an international collaborative study
title_sort reproducibility of telomere length assessment: an international collaborative study
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681105/
https://www.ncbi.nlm.nih.gov/pubmed/25239152
http://dx.doi.org/10.1093/ije/dyu191
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