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Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species
Recent advances in tracking technologies such as GPS or video tracking systems describe the movement paths of individuals in unprecedented details and are increasingly used in different fields, including ecology. However, extracting information from raw movement data requires advanced analysis techn...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682988/ https://www.ncbi.nlm.nih.gov/pubmed/26680591 http://dx.doi.org/10.1371/journal.pone.0145345 |
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author | Soleymani, Ali Pennekamp, Frank Petchey, Owen L. Weibel, Robert |
author_facet | Soleymani, Ali Pennekamp, Frank Petchey, Owen L. Weibel, Robert |
author_sort | Soleymani, Ali |
collection | PubMed |
description | Recent advances in tracking technologies such as GPS or video tracking systems describe the movement paths of individuals in unprecedented details and are increasingly used in different fields, including ecology. However, extracting information from raw movement data requires advanced analysis techniques, for instance to infer behaviors expressed during a certain period of the recorded trajectory, or gender or species identity in case data is obtained from remote tracking. In this paper, we address how different movement features affect the ability to automatically classify the species identity, using a dataset of unicellular microbes (i.e., ciliates). Previously, morphological attributes and simple movement metrics, such as speed, were used for classifying ciliate species. Here, we demonstrate that adding advanced movement features, in particular such based on discrete wavelet transform, to morphological features can improve classification. These results may have practical applications in automated monitoring of waste water facilities as well as environmental monitoring of aquatic systems. |
format | Online Article Text |
id | pubmed-4682988 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-46829882015-12-31 Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species Soleymani, Ali Pennekamp, Frank Petchey, Owen L. Weibel, Robert PLoS One Research Article Recent advances in tracking technologies such as GPS or video tracking systems describe the movement paths of individuals in unprecedented details and are increasingly used in different fields, including ecology. However, extracting information from raw movement data requires advanced analysis techniques, for instance to infer behaviors expressed during a certain period of the recorded trajectory, or gender or species identity in case data is obtained from remote tracking. In this paper, we address how different movement features affect the ability to automatically classify the species identity, using a dataset of unicellular microbes (i.e., ciliates). Previously, morphological attributes and simple movement metrics, such as speed, were used for classifying ciliate species. Here, we demonstrate that adding advanced movement features, in particular such based on discrete wavelet transform, to morphological features can improve classification. These results may have practical applications in automated monitoring of waste water facilities as well as environmental monitoring of aquatic systems. Public Library of Science 2015-12-17 /pmc/articles/PMC4682988/ /pubmed/26680591 http://dx.doi.org/10.1371/journal.pone.0145345 Text en © 2015 Soleymani et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Soleymani, Ali Pennekamp, Frank Petchey, Owen L. Weibel, Robert Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species |
title | Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species |
title_full | Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species |
title_fullStr | Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species |
title_full_unstemmed | Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species |
title_short | Developing and Integrating Advanced Movement Features Improves Automated Classification of Ciliate Species |
title_sort | developing and integrating advanced movement features improves automated classification of ciliate species |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682988/ https://www.ncbi.nlm.nih.gov/pubmed/26680591 http://dx.doi.org/10.1371/journal.pone.0145345 |
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