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Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1)
PREMISE OF THE STUDY: Multiplexed microsatellite markers were developed for population genetic studies in the pseudometallophyte Noccaea caerulescens (Brassicaceae), a model species to investigate metal tolerance and hyperaccumulation in higher plants. METHODS AND RESULTS: Microsatellite loci were i...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683039/ https://www.ncbi.nlm.nih.gov/pubmed/26697274 http://dx.doi.org/10.3732/apps.1500052 |
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author | Mousset, Mathilde Flaven, Elodie Justy, Fabienne Pouzadoux, Juliette Gode, Cécile Pauwels, Maxime Gonneau, Cédric |
author_facet | Mousset, Mathilde Flaven, Elodie Justy, Fabienne Pouzadoux, Juliette Gode, Cécile Pauwels, Maxime Gonneau, Cédric |
author_sort | Mousset, Mathilde |
collection | PubMed |
description | PREMISE OF THE STUDY: Multiplexed microsatellite markers were developed for population genetic studies in the pseudometallophyte Noccaea caerulescens (Brassicaceae), a model species to investigate metal tolerance and hyperaccumulation in higher plants. METHODS AND RESULTS: Microsatellite loci were isolated through pyrosequencing of an enriched DNA library. Three multiplexes combining four previously published and 17 newly designed markers were developed. The new markers were screened in metallicolous and nonmetallicolous populations from southern France. The total number of alleles per locus ranged from five to 18. The observed heterozygosity per locus and per population ranged from 0 to 0.83, and expected heterozygosity ranged from 0 to 0.89. CONCLUSIONS: The investigated loci showed reasonable to high levels of polymorphism at the regional scale. The multiplex set should be helpful in investigating genetic diversity, population structure, and demographic history in N. caerulescens at various spatial scales. |
format | Online Article Text |
id | pubmed-4683039 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-46830392015-12-22 Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) Mousset, Mathilde Flaven, Elodie Justy, Fabienne Pouzadoux, Juliette Gode, Cécile Pauwels, Maxime Gonneau, Cédric Appl Plant Sci Primer Note PREMISE OF THE STUDY: Multiplexed microsatellite markers were developed for population genetic studies in the pseudometallophyte Noccaea caerulescens (Brassicaceae), a model species to investigate metal tolerance and hyperaccumulation in higher plants. METHODS AND RESULTS: Microsatellite loci were isolated through pyrosequencing of an enriched DNA library. Three multiplexes combining four previously published and 17 newly designed markers were developed. The new markers were screened in metallicolous and nonmetallicolous populations from southern France. The total number of alleles per locus ranged from five to 18. The observed heterozygosity per locus and per population ranged from 0 to 0.83, and expected heterozygosity ranged from 0 to 0.89. CONCLUSIONS: The investigated loci showed reasonable to high levels of polymorphism at the regional scale. The multiplex set should be helpful in investigating genetic diversity, population structure, and demographic history in N. caerulescens at various spatial scales. Botanical Society of America 2015-12-09 /pmc/articles/PMC4683039/ /pubmed/26697274 http://dx.doi.org/10.3732/apps.1500052 Text en © 2015 Mousset et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Mousset, Mathilde Flaven, Elodie Justy, Fabienne Pouzadoux, Juliette Gode, Cécile Pauwels, Maxime Gonneau, Cédric Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) |
title | Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) |
title_full | Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) |
title_fullStr | Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) |
title_full_unstemmed | Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) |
title_short | Characterization and multiplexing of 21 microsatellite markers for the herb Noccaea caerulescens (Brassicaceae)(1) |
title_sort | characterization and multiplexing of 21 microsatellite markers for the herb noccaea caerulescens (brassicaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683039/ https://www.ncbi.nlm.nih.gov/pubmed/26697274 http://dx.doi.org/10.3732/apps.1500052 |
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