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Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)

PREMISE OF THE STUDY: We developed microsatellite markers for Carpotroche brasiliensis (Flacourtiaceae), a dioecious tree that is used as a food resource by midsize animals of the Brazilian fauna. METHODS AND RESULTS: We designed 30 primer pairs using next-generation sequencing and classified 25 pai...

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Detalles Bibliográficos
Autores principales: Bittencourt, Flora, Alves, Jackeline S., Gaiotto, Fernanda A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683040/
https://www.ncbi.nlm.nih.gov/pubmed/26697275
http://dx.doi.org/10.3732/apps.1500068
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author Bittencourt, Flora
Alves, Jackeline S.
Gaiotto, Fernanda A.
author_facet Bittencourt, Flora
Alves, Jackeline S.
Gaiotto, Fernanda A.
author_sort Bittencourt, Flora
collection PubMed
description PREMISE OF THE STUDY: We developed microsatellite markers for Carpotroche brasiliensis (Flacourtiaceae), a dioecious tree that is used as a food resource by midsize animals of the Brazilian fauna. METHODS AND RESULTS: We designed 30 primer pairs using next-generation sequencing and classified 25 pairs as polymorphic. Observed heterozygosity ranged from 0.5 to 1.0, and expected heterozygosity ranged from 0.418 to 0.907. The combined probability of exclusion was greater than 0.999 and the combined probability of identity was less than 0.001, indicating that these microsatellites are appropriate for investigations of genetic structure, individual identification, and paternity testing. CONCLUSIONS: The developed molecular tools may contribute to future studies of population genetics, answering ecological and evolutionary questions regarding efficient conservation strategies for C. brasiliensis.
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spelling pubmed-46830402015-12-22 Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1) Bittencourt, Flora Alves, Jackeline S. Gaiotto, Fernanda A. Appl Plant Sci Primer Note PREMISE OF THE STUDY: We developed microsatellite markers for Carpotroche brasiliensis (Flacourtiaceae), a dioecious tree that is used as a food resource by midsize animals of the Brazilian fauna. METHODS AND RESULTS: We designed 30 primer pairs using next-generation sequencing and classified 25 pairs as polymorphic. Observed heterozygosity ranged from 0.5 to 1.0, and expected heterozygosity ranged from 0.418 to 0.907. The combined probability of exclusion was greater than 0.999 and the combined probability of identity was less than 0.001, indicating that these microsatellites are appropriate for investigations of genetic structure, individual identification, and paternity testing. CONCLUSIONS: The developed molecular tools may contribute to future studies of population genetics, answering ecological and evolutionary questions regarding efficient conservation strategies for C. brasiliensis. Botanical Society of America 2015-12-14 /pmc/articles/PMC4683040/ /pubmed/26697275 http://dx.doi.org/10.3732/apps.1500068 Text en © 2015 Bittencourt et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Bittencourt, Flora
Alves, Jackeline S.
Gaiotto, Fernanda A.
Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
title Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
title_full Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
title_fullStr Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
title_full_unstemmed Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
title_short Microsatellites for Carpotroche brasiliensis (Flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
title_sort microsatellites for carpotroche brasiliensis (flacourtiaceae), a useful species for agroforestry and ecosystem conservation(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683040/
https://www.ncbi.nlm.nih.gov/pubmed/26697275
http://dx.doi.org/10.3732/apps.1500068
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