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Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska

We examined patterns in soil microbial community composition across a successional gradient of drained lake basins in the Arctic Coastal Plain. Analysis of 16S rRNA gene sequences revealed that methanogens closely related to Candidatus ‘Methanoflorens stordalenmirensis’ were the dominant archaea, co...

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Autores principales: Kao-Kniffin, J., Woodcroft, B.J., Carver, S.M., Bockheim, J.G., Handelsman, J., Tyson, G.W., Hinkel, K.M., Mueller, C.W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683534/
https://www.ncbi.nlm.nih.gov/pubmed/26681584
http://dx.doi.org/10.1038/srep18165
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author Kao-Kniffin, J.
Woodcroft, B.J.
Carver, S.M.
Bockheim, J.G.
Handelsman, J.
Tyson, G.W.
Hinkel, K.M.
Mueller, C.W.
author_facet Kao-Kniffin, J.
Woodcroft, B.J.
Carver, S.M.
Bockheim, J.G.
Handelsman, J.
Tyson, G.W.
Hinkel, K.M.
Mueller, C.W.
author_sort Kao-Kniffin, J.
collection PubMed
description We examined patterns in soil microbial community composition across a successional gradient of drained lake basins in the Arctic Coastal Plain. Analysis of 16S rRNA gene sequences revealed that methanogens closely related to Candidatus ‘Methanoflorens stordalenmirensis’ were the dominant archaea, comprising >50% of the total archaea at most sites, with particularly high levels in the oldest basins and in the top 57 cm of soil (active and transition layers). Bacterial community composition was more diverse, with lineages from OP11, Actinobacteria, Bacteroidetes, and Proteobacteria found in high relative abundance across all sites. Notably, microbial composition appeared to converge in the active layer, but transition and permafrost layer communities across the sites were significantly different to one another. Microbial biomass using fatty acid-based analysis indicated that the youngest basins had increased abundances of gram-positive bacteria and saprotrophic fungi at higher soil organic carbon levels, while the oldest basins displayed an increase in only the gram-positive bacteria. While this study showed differences in microbial populations across the sites relevant to basin age, the dominance of Candidatus ‘M. stordalenmirensis’ across the chronosequence indicates the potential for changes in local carbon cycling, depending on how these methanogens and associated microbial communities respond to warming temperatures.
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spelling pubmed-46835342015-12-21 Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska Kao-Kniffin, J. Woodcroft, B.J. Carver, S.M. Bockheim, J.G. Handelsman, J. Tyson, G.W. Hinkel, K.M. Mueller, C.W. Sci Rep Article We examined patterns in soil microbial community composition across a successional gradient of drained lake basins in the Arctic Coastal Plain. Analysis of 16S rRNA gene sequences revealed that methanogens closely related to Candidatus ‘Methanoflorens stordalenmirensis’ were the dominant archaea, comprising >50% of the total archaea at most sites, with particularly high levels in the oldest basins and in the top 57 cm of soil (active and transition layers). Bacterial community composition was more diverse, with lineages from OP11, Actinobacteria, Bacteroidetes, and Proteobacteria found in high relative abundance across all sites. Notably, microbial composition appeared to converge in the active layer, but transition and permafrost layer communities across the sites were significantly different to one another. Microbial biomass using fatty acid-based analysis indicated that the youngest basins had increased abundances of gram-positive bacteria and saprotrophic fungi at higher soil organic carbon levels, while the oldest basins displayed an increase in only the gram-positive bacteria. While this study showed differences in microbial populations across the sites relevant to basin age, the dominance of Candidatus ‘M. stordalenmirensis’ across the chronosequence indicates the potential for changes in local carbon cycling, depending on how these methanogens and associated microbial communities respond to warming temperatures. Nature Publishing Group 2015-12-18 /pmc/articles/PMC4683534/ /pubmed/26681584 http://dx.doi.org/10.1038/srep18165 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Kao-Kniffin, J.
Woodcroft, B.J.
Carver, S.M.
Bockheim, J.G.
Handelsman, J.
Tyson, G.W.
Hinkel, K.M.
Mueller, C.W.
Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
title Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
title_full Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
title_fullStr Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
title_full_unstemmed Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
title_short Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
title_sort archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683534/
https://www.ncbi.nlm.nih.gov/pubmed/26681584
http://dx.doi.org/10.1038/srep18165
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