Cargando…

Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG

Here we describe the treatment of the small-angle X-ray Scattering (SAXS) data used during SpeG quaternary structure study as part of the research article “Substrate induced allosteric change in the quaternary structure of the spermidine N-acetyltransferase SpeG” published in Journal of Molecular Bi...

Descripción completa

Detalles Bibliográficos
Autores principales: Weigand, Steven, Filippova, Ekaterina V., Kiryukhina, Olga, Anderson, Wayne F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4688414/
https://www.ncbi.nlm.nih.gov/pubmed/26793756
http://dx.doi.org/10.1016/j.dib.2015.11.044
_version_ 1782406733744832512
author Weigand, Steven
Filippova, Ekaterina V.
Kiryukhina, Olga
Anderson, Wayne F.
author_facet Weigand, Steven
Filippova, Ekaterina V.
Kiryukhina, Olga
Anderson, Wayne F.
author_sort Weigand, Steven
collection PubMed
description Here we describe the treatment of the small-angle X-ray Scattering (SAXS) data used during SpeG quaternary structure study as part of the research article “Substrate induced allosteric change in the quaternary structure of the spermidine N-acetyltransferase SpeG” published in Journal of Molecular Biology [1]. These data were collected on two separate area detectors as separate dilution series of the SpeG and the SpeG with spermine samples along with data from their companion buffers. The data were radially integrated, corrected for incident beam variation, and scaled to absolute units. After subtraction of volume-fraction scaled buffer scattering and division by the SpeG concentration, multiple scattering curves free of an inter-molecular structure factor were derived from the dilution series. Rather than extrapolating to infinite dilution, the structure factor contribution was estimated by fitting to the full set of data provided by dividing the scattering curves of a dilution series by the curve from the most dilute sample in that series.
format Online
Article
Text
id pubmed-4688414
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-46884142016-01-20 Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG Weigand, Steven Filippova, Ekaterina V. Kiryukhina, Olga Anderson, Wayne F. Data Brief Data Article Here we describe the treatment of the small-angle X-ray Scattering (SAXS) data used during SpeG quaternary structure study as part of the research article “Substrate induced allosteric change in the quaternary structure of the spermidine N-acetyltransferase SpeG” published in Journal of Molecular Biology [1]. These data were collected on two separate area detectors as separate dilution series of the SpeG and the SpeG with spermine samples along with data from their companion buffers. The data were radially integrated, corrected for incident beam variation, and scaled to absolute units. After subtraction of volume-fraction scaled buffer scattering and division by the SpeG concentration, multiple scattering curves free of an inter-molecular structure factor were derived from the dilution series. Rather than extrapolating to infinite dilution, the structure factor contribution was estimated by fitting to the full set of data provided by dividing the scattering curves of a dilution series by the curve from the most dilute sample in that series. Elsevier 2015-11-30 /pmc/articles/PMC4688414/ /pubmed/26793756 http://dx.doi.org/10.1016/j.dib.2015.11.044 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Weigand, Steven
Filippova, Ekaterina V.
Kiryukhina, Olga
Anderson, Wayne F.
Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG
title Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG
title_full Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG
title_fullStr Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG
title_full_unstemmed Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG
title_short Small angle X-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine N-acetyltransferase SpeG
title_sort small angle x-ray scattering data and structure factor fitting for the study of the quaternary structure of the spermidine n-acetyltransferase speg
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4688414/
https://www.ncbi.nlm.nih.gov/pubmed/26793756
http://dx.doi.org/10.1016/j.dib.2015.11.044
work_keys_str_mv AT weigandsteven smallanglexrayscatteringdataandstructurefactorfittingforthestudyofthequaternarystructureofthespermidinenacetyltransferasespeg
AT filippovaekaterinav smallanglexrayscatteringdataandstructurefactorfittingforthestudyofthequaternarystructureofthespermidinenacetyltransferasespeg
AT kiryukhinaolga smallanglexrayscatteringdataandstructurefactorfittingforthestudyofthequaternarystructureofthespermidinenacetyltransferasespeg
AT andersonwaynef smallanglexrayscatteringdataandstructurefactorfittingforthestudyofthequaternarystructureofthespermidinenacetyltransferasespeg