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How Obstacles Perturb Population Fronts and Alter Their Genetic Structure

As populations spread into new territory, environmental heterogeneities can shape the population front and genetic composition. We focus here on the effects of an important building block of heterogeneous environments, isolated obstacles. With a combination of experiments, theory, and simulation, we...

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Autores principales: Möbius, Wolfram, Murray, Andrew W., Nelson, David R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4690605/
https://www.ncbi.nlm.nih.gov/pubmed/26696601
http://dx.doi.org/10.1371/journal.pcbi.1004615
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author Möbius, Wolfram
Murray, Andrew W.
Nelson, David R.
author_facet Möbius, Wolfram
Murray, Andrew W.
Nelson, David R.
author_sort Möbius, Wolfram
collection PubMed
description As populations spread into new territory, environmental heterogeneities can shape the population front and genetic composition. We focus here on the effects of an important building block of heterogeneous environments, isolated obstacles. With a combination of experiments, theory, and simulation, we show how isolated obstacles both create long-lived distortions of the front shape and amplify the effect of genetic drift. A system of bacteriophage T7 spreading on a spatially heterogeneous Escherichia coli lawn serves as an experimental model system to study population expansions. Using an inkjet printer, we create well-defined replicates of the lawn and quantitatively study the population expansion of phage T7. The transient perturbations of the population front found in the experiments are well described by a model in which the front moves with constant speed. Independent of the precise details of the expansion, we show that obstacles create a kink in the front that persists over large distances and is insensitive to the details of the obstacle’s shape. The small deviations between experimental findings and the predictions of the constant speed model can be understood with a more general reaction-diffusion model, which reduces to the constant speed model when the obstacle size is large compared to the front width. Using this framework, we demonstrate that frontier genotypes just grazing the side of an isolated obstacle increase in abundance, a phenomenon we call ‘geometry-enhanced genetic drift’, complementary to the founder effect associated with spatial bottlenecks. Bacterial range expansions around nutrient-poor barriers and stochastic simulations confirm this prediction. The effect of the obstacle on the genealogy of individuals at the front is characterized by simulations and rationalized using the constant speed model. Lastly, we consider the effect of two obstacles on front shape and genetic composition of the population illuminating the effects expected from complex environments with many obstacles.
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spelling pubmed-46906052015-12-31 How Obstacles Perturb Population Fronts and Alter Their Genetic Structure Möbius, Wolfram Murray, Andrew W. Nelson, David R. PLoS Comput Biol Research Article As populations spread into new territory, environmental heterogeneities can shape the population front and genetic composition. We focus here on the effects of an important building block of heterogeneous environments, isolated obstacles. With a combination of experiments, theory, and simulation, we show how isolated obstacles both create long-lived distortions of the front shape and amplify the effect of genetic drift. A system of bacteriophage T7 spreading on a spatially heterogeneous Escherichia coli lawn serves as an experimental model system to study population expansions. Using an inkjet printer, we create well-defined replicates of the lawn and quantitatively study the population expansion of phage T7. The transient perturbations of the population front found in the experiments are well described by a model in which the front moves with constant speed. Independent of the precise details of the expansion, we show that obstacles create a kink in the front that persists over large distances and is insensitive to the details of the obstacle’s shape. The small deviations between experimental findings and the predictions of the constant speed model can be understood with a more general reaction-diffusion model, which reduces to the constant speed model when the obstacle size is large compared to the front width. Using this framework, we demonstrate that frontier genotypes just grazing the side of an isolated obstacle increase in abundance, a phenomenon we call ‘geometry-enhanced genetic drift’, complementary to the founder effect associated with spatial bottlenecks. Bacterial range expansions around nutrient-poor barriers and stochastic simulations confirm this prediction. The effect of the obstacle on the genealogy of individuals at the front is characterized by simulations and rationalized using the constant speed model. Lastly, we consider the effect of two obstacles on front shape and genetic composition of the population illuminating the effects expected from complex environments with many obstacles. Public Library of Science 2015-12-22 /pmc/articles/PMC4690605/ /pubmed/26696601 http://dx.doi.org/10.1371/journal.pcbi.1004615 Text en © 2015 Möbius et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Möbius, Wolfram
Murray, Andrew W.
Nelson, David R.
How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
title How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
title_full How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
title_fullStr How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
title_full_unstemmed How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
title_short How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
title_sort how obstacles perturb population fronts and alter their genetic structure
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4690605/
https://www.ncbi.nlm.nih.gov/pubmed/26696601
http://dx.doi.org/10.1371/journal.pcbi.1004615
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