Cargando…
Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Supervised machine learning can be used to predict which drugs human cardiomyocytes have been exposed to. Using electrophysiological data collected from human cardiomyocytes with known exposure to different drugs, a supervised machine learning algorithm can be trained to recognize and classify cells...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4690607/ https://www.ncbi.nlm.nih.gov/pubmed/26695765 http://dx.doi.org/10.1371/journal.pone.0144572 |
_version_ | 1782407032237719552 |
---|---|
author | Heylman, Christopher Datta, Rupsa Sobrino, Agua George, Steven Gratton, Enrico |
author_facet | Heylman, Christopher Datta, Rupsa Sobrino, Agua George, Steven Gratton, Enrico |
author_sort | Heylman, Christopher |
collection | PubMed |
description | Supervised machine learning can be used to predict which drugs human cardiomyocytes have been exposed to. Using electrophysiological data collected from human cardiomyocytes with known exposure to different drugs, a supervised machine learning algorithm can be trained to recognize and classify cells that have been exposed to an unknown drug. Furthermore, the learning algorithm provides information on the relative contribution of each data parameter to the overall classification. Probabilities and confidence in the accuracy of each classification may also be determined by the algorithm. In this study, the electrophysiological effects of β–adrenergic drugs, propranolol and isoproterenol, on cardiomyocytes derived from human induced pluripotent stem cells (hiPS-CM) were assessed. The electrophysiological data were collected using high temporal resolution 2-photon microscopy of voltage sensitive dyes as a reporter of membrane voltage. The results demonstrate the ability of our algorithm to accurately assess, classify, and predict hiPS-CM membrane depolarization following exposure to chronotropic drugs. |
format | Online Article Text |
id | pubmed-4690607 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-46906072015-12-31 Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Heylman, Christopher Datta, Rupsa Sobrino, Agua George, Steven Gratton, Enrico PLoS One Research Article Supervised machine learning can be used to predict which drugs human cardiomyocytes have been exposed to. Using electrophysiological data collected from human cardiomyocytes with known exposure to different drugs, a supervised machine learning algorithm can be trained to recognize and classify cells that have been exposed to an unknown drug. Furthermore, the learning algorithm provides information on the relative contribution of each data parameter to the overall classification. Probabilities and confidence in the accuracy of each classification may also be determined by the algorithm. In this study, the electrophysiological effects of β–adrenergic drugs, propranolol and isoproterenol, on cardiomyocytes derived from human induced pluripotent stem cells (hiPS-CM) were assessed. The electrophysiological data were collected using high temporal resolution 2-photon microscopy of voltage sensitive dyes as a reporter of membrane voltage. The results demonstrate the ability of our algorithm to accurately assess, classify, and predict hiPS-CM membrane depolarization following exposure to chronotropic drugs. Public Library of Science 2015-12-22 /pmc/articles/PMC4690607/ /pubmed/26695765 http://dx.doi.org/10.1371/journal.pone.0144572 Text en © 2015 Heylman et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Heylman, Christopher Datta, Rupsa Sobrino, Agua George, Steven Gratton, Enrico Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes |
title | Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes |
title_full | Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes |
title_fullStr | Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes |
title_full_unstemmed | Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes |
title_short | Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes |
title_sort | supervised machine learning for classification of the electrophysiological effects of chronotropic drugs on human induced pluripotent stem cell-derived cardiomyocytes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4690607/ https://www.ncbi.nlm.nih.gov/pubmed/26695765 http://dx.doi.org/10.1371/journal.pone.0144572 |
work_keys_str_mv | AT heylmanchristopher supervisedmachinelearningforclassificationoftheelectrophysiologicaleffectsofchronotropicdrugsonhumaninducedpluripotentstemcellderivedcardiomyocytes AT dattarupsa supervisedmachinelearningforclassificationoftheelectrophysiologicaleffectsofchronotropicdrugsonhumaninducedpluripotentstemcellderivedcardiomyocytes AT sobrinoagua supervisedmachinelearningforclassificationoftheelectrophysiologicaleffectsofchronotropicdrugsonhumaninducedpluripotentstemcellderivedcardiomyocytes AT georgesteven supervisedmachinelearningforclassificationoftheelectrophysiologicaleffectsofchronotropicdrugsonhumaninducedpluripotentstemcellderivedcardiomyocytes AT grattonenrico supervisedmachinelearningforclassificationoftheelectrophysiologicaleffectsofchronotropicdrugsonhumaninducedpluripotentstemcellderivedcardiomyocytes |