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Complete kinetic mechanism for recycling of the bacterial ribosome

How EF-G and RRF act together to split a post-termination ribosomal complex into its subunits has remained obscure. Here, using stopped-flow experiments with Rayleigh light scattering detection and quench-flow experiments with radio-detection of GTP hydrolysis, we have clarified the kinetic mechanis...

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Detalles Bibliográficos
Autores principales: Borg, Anneli, Pavlov, Michael, Ehrenberg, Måns
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691825/
https://www.ncbi.nlm.nih.gov/pubmed/26527791
http://dx.doi.org/10.1261/rna.053157.115
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author Borg, Anneli
Pavlov, Michael
Ehrenberg, Måns
author_facet Borg, Anneli
Pavlov, Michael
Ehrenberg, Måns
author_sort Borg, Anneli
collection PubMed
description How EF-G and RRF act together to split a post-termination ribosomal complex into its subunits has remained obscure. Here, using stopped-flow experiments with Rayleigh light scattering detection and quench-flow experiments with radio-detection of GTP hydrolysis, we have clarified the kinetic mechanism of ribosome recycling and obtained precise estimates of its kinetic parameters. Ribosome splitting requires that EF-G binds to an already RRF-containing ribosome. EF-G binding to RRF-free ribosomes induces futile rounds of GTP hydrolysis and inhibits ribosome splitting, implying that while RRF is purely an activator of recycling, EF-G acts as both activator and competitive inhibitor of RRF in recycling of the post-termination ribosome. The ribosome splitting rate and the number of GTPs consumed per splitting event depend strongly on the free concentrations of EF-G and RRF. The maximal recycling rate, here estimated as 25 sec(−1), is approached at very high concentrations of EF-G and RRF with RRF in high excess over EF-G. The present in vitro results, suggesting an in vivo ribosome recycling rate of ∼5 sec(−1), are discussed in the perspective of rapidly growing bacterial cells.
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spelling pubmed-46918252016-01-07 Complete kinetic mechanism for recycling of the bacterial ribosome Borg, Anneli Pavlov, Michael Ehrenberg, Måns RNA Article How EF-G and RRF act together to split a post-termination ribosomal complex into its subunits has remained obscure. Here, using stopped-flow experiments with Rayleigh light scattering detection and quench-flow experiments with radio-detection of GTP hydrolysis, we have clarified the kinetic mechanism of ribosome recycling and obtained precise estimates of its kinetic parameters. Ribosome splitting requires that EF-G binds to an already RRF-containing ribosome. EF-G binding to RRF-free ribosomes induces futile rounds of GTP hydrolysis and inhibits ribosome splitting, implying that while RRF is purely an activator of recycling, EF-G acts as both activator and competitive inhibitor of RRF in recycling of the post-termination ribosome. The ribosome splitting rate and the number of GTPs consumed per splitting event depend strongly on the free concentrations of EF-G and RRF. The maximal recycling rate, here estimated as 25 sec(−1), is approached at very high concentrations of EF-G and RRF with RRF in high excess over EF-G. The present in vitro results, suggesting an in vivo ribosome recycling rate of ∼5 sec(−1), are discussed in the perspective of rapidly growing bacterial cells. Cold Spring Harbor Laboratory Press 2016-01 /pmc/articles/PMC4691825/ /pubmed/26527791 http://dx.doi.org/10.1261/rna.053157.115 Text en © 2015 Borg et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society http://creativecommons.org/licenses/by-nc/4.0/ This article, published in RNA, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.
spellingShingle Article
Borg, Anneli
Pavlov, Michael
Ehrenberg, Måns
Complete kinetic mechanism for recycling of the bacterial ribosome
title Complete kinetic mechanism for recycling of the bacterial ribosome
title_full Complete kinetic mechanism for recycling of the bacterial ribosome
title_fullStr Complete kinetic mechanism for recycling of the bacterial ribosome
title_full_unstemmed Complete kinetic mechanism for recycling of the bacterial ribosome
title_short Complete kinetic mechanism for recycling of the bacterial ribosome
title_sort complete kinetic mechanism for recycling of the bacterial ribosome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691825/
https://www.ncbi.nlm.nih.gov/pubmed/26527791
http://dx.doi.org/10.1261/rna.053157.115
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