Cargando…

Watson–Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation

RNA transcripts that include expanded CCUG repeats are associated with myotonic dystrophy type 2. Crystal structures of two CCUG-containing oligomers show that the RNA strands associate into slipped duplexes that contain noncanonical C–U pairs that have apparently undergone tautomeric transition or...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rypniewski, Wojciech, Banaszak, Katarzyna, Kuliński, Tadeusz, Kiliszek, Agnieszka
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2016
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691832/ https://www.ncbi.nlm.nih.gov/pubmed/26543073 http://dx.doi.org/10.1261/rna.052399.115

Ejemplares similares

Recognition of Watson-Crick base pairs: constraints and limits due to geometric selection and tautomerism
por: Westhof, Eric, et al.
Publicado: (2014)

Multiscale Modeling of Wobble to Watson–Crick-Like Guanine–Uracil Tautomerization Pathways in RNA
por: Chandorkar, Shreya, et al.
Publicado: (2021)

An innate twist between Crick’s wobble and Watson-Crick base pairs
por: Ananth, Prakash, et al.
Publicado: (2013)

Accurate geometrical restraints for Watson–Crick base pairs
por: Gilski, Miroslaw, et al.
Publicado: (2019)

Non-dissociative structural transitions of the Watson-Crick and reverse Watson-Crick А·Т DNA base pairs into the Hoogsteen and reverse Hoogsteen forms
por: Brovarets’, Ol’ha O., et al.
Publicado: (2018)

Crick, Watson y el ADN
por: Strathern, Paul, 1940-
Publicado: (1999)

The multiple personalities of Watson and Crick strands
por: Cartwright, Reed A, et al.
Publicado: (2011)

A rule of seven in Watson-Crick base pairing of mismatched sequences
por: Cisse, Ibrahim I., et al.
Publicado: (2012)

Crystallographic evidence of Watson–Crick connectivity in the base pair of anionic adenine with thymine
por: Mishra, Manish Kumar, et al.
Publicado: (2020)

Structural studies of CNG repeats
por: Kiliszek, Agnieszka, et al.
Publicado: (2014)

The first crystal structures of RNA–PNA duplexes and a PNA-PNA duplex containing mismatches—toward anti-sense therapy against TREDs
por: Kiliszek, Agnieszka, et al.
Publicado: (2016)

Alchemical Free-Energy Calculations of Watson–Crick and Hoogsteen Base Pairing Interconversion in DNA
por: Geronimo, Inacrist, et al.
Publicado: (2022)

KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry
por: Betz, Karin, et al.
Publicado: (2012)

Comparable Stability of Hoogsteen and Watson–Crick Base Pairs in Ionic Liquid Choline Dihydrogen Phosphate
por: Tateishi-Karimata, Hisae, et al.
Publicado: (2014)

Non-Watson–Crick RNA synthesis suited to origin functions
por: Puthenvedu, Deepa, et al.
Publicado: (2018)

Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson–Crick terminal base pairs
por: O'Toole, Amanda S., et al.
Publicado: (2006)

Characterization of the Trans Watson-Crick GU Base Pair Located in the Catalytic Core of the Antigenomic HDV Ribozyme
por: Lévesque, Dominique, et al.
Publicado: (2012)

Silver (I) as DNA glue: Ag(+)-mediated guanine pairing revealed by removing Watson-Crick constraints
por: Swasey, Steven M., et al.
Publicado: (2015)

Watson-Crick Base-Pairing Requirements for ssDNA Recognition and Processing in Replication-Initiating HUH Endonucleases
por: Smiley, Adam T., et al.
Publicado: (2022)

Effect of loop length variation on quadruplex-Watson Crick duplex competition
por: Kumar, Niti, et al.
Publicado: (2008)

Atomistic insight into the kinetic pathways for Watson–Crick to Hoogsteen transitions in DNA
por: Vreede, Jocelyne, et al.
Publicado: (2019)

Higher order structural effects stabilizing the reverse Watson–Crick Guanine-Cytosine base pair in functional RNAs
por: Chawla, Mohit, et al.
Publicado: (2014)

Free energy landscape and transition pathways from Watson–Crick to Hoogsteen base pairing in free duplex DNA
por: Yang, Changwon, et al.
Publicado: (2015)

Selective prebiotic conversion of pyrimidine and purine anhydronucleosides into Watson-Crick base-pairing arabino-furanosyl nucleosides in water
por: Roberts, Samuel J., et al.
Publicado: (2018)

Crystallographic characterization of CCG repeats
por: Kiliszek, Agnieszka, et al.
Publicado: (2012)

Atomic resolution structure of CAG RNA repeats: structural insights and implications for the trinucleotide repeat expansion diseases
por: Kiliszek, Agnieszka, et al.
Publicado: (2010)

Differential Stabilities and Sequence-Dependent Base Pair Opening Dynamics of Watson–Crick Base Pairs with 5-Hydroxymethylcytosine, 5-Formylcytosine, or 5-Carboxylcytosine
por: Szulik, Marta W., et al.
Publicado: (2015)

Probing Watson-Crick and Hoogsteen base pairing in duplex DNA using dynamic nuclear polarization solid-state NMR spectroscopy
por: Conroy, Daniel W., et al.
Publicado: (2022)

Watson‐Crick Base Pairing of N‐Methoxy‐1,3‐Oxazinane (MOANA) Nucleoside Analogues within Double‐Helical DNA
por: Afari, Mark N. K., et al.
Publicado: (2023)

Backbone-free duplex-stacked monomer nucleic acids exhibiting Watson–Crick selectivity
por: Smith, Gregory P., et al.
Publicado: (2018)

Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome
por: Kiliszek, Agnieszka, et al.
Publicado: (2011)

Structural insights into CUG repeats containing the ‘stretched U–U wobble’: implications for myotonic dystrophy
por: Kiliszek, Agnieszka, et al.
Publicado: (2009)

Structural insights into synthetic ligands targeting A–A pairs in disease-related CAG RNA repeats
por: Mukherjee, Sanjukta, et al.
Publicado: (2019)

Correction to Differential Stabilities and Sequence-Dependent Base Pair Opening Dynamics of Watson–Crick Base Pairs with 5-Hydroxymethylcytosine, 5-Formylcytosine, or 5-Carboxylcytosine
por: Szulik, Marta W., et al.
Publicado: (2015)

Complete Genome Sequences of Aerococcus christensenii CCUG 28831(T), Aerococcus sanguinicola CCUG 43001(T), Aerococcus urinae CCUG 36881(T), Aerococcus urinaeequi CCUG 28094(T), Aerococcus urinaehominis CCUG 42038 B(T), and Aerococcus viridans CCUG 4311(T)
por: Carkaci, Derya, et al.
Publicado: (2016)

Thermodynamic stability and Watson–Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
por: Ui-Tei, Kumiko, et al.
Publicado: (2008)

Silver(I) Coordination in Silver(I)‐Mediated Homo Base Pairs of 6‐Pyrazolylpurine in DNA Duplexes Involves the Watson–Crick Edge
por: Escher, Daniela, et al.
Publicado: (2020)

A natural non-Watson–Crick base pair in human mitochondrial tRNA(Thr) causes structural and functional susceptibility to local mutations
por: Wang, Yong, et al.
Publicado: (2018)

Correction to ‘Thermodynamic stability and Watson–Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect’
Publicado: (2023)

5‐Oxyacetic Acid Modification Destabilizes Double Helical Stem Structures and Favors Anionic Watson–Crick like cmo(5)U‐G Base Pairs
por: Strebitzer, Elisabeth, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_k78716or14tu810ka0hvu1113m