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Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate

BACKGROUND: Several studies have highlighted the use of serological data in detecting a reduction in malaria transmission intensity. These studies have typically used serology as an adjunct measure and no formal examination of sample size calculations for this approach has been conducted. METHODS: A...

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Autores principales: Sepúlveda, Nuno, Paulino, Carlos Daniel, Drakeley, Chris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696297/
https://www.ncbi.nlm.nih.gov/pubmed/26715538
http://dx.doi.org/10.1186/s12936-015-1050-3
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author Sepúlveda, Nuno
Paulino, Carlos Daniel
Drakeley, Chris
author_facet Sepúlveda, Nuno
Paulino, Carlos Daniel
Drakeley, Chris
author_sort Sepúlveda, Nuno
collection PubMed
description BACKGROUND: Several studies have highlighted the use of serological data in detecting a reduction in malaria transmission intensity. These studies have typically used serology as an adjunct measure and no formal examination of sample size calculations for this approach has been conducted. METHODS: A sample size calculator is proposed for cross-sectional surveys using data simulation from a reverse catalytic model assuming a reduction in seroconversion rate (SCR) at a given change point before sampling. This calculator is based on logistic approximations for the underlying power curves to detect a reduction in SCR in relation to the hypothesis of a stable SCR for the same data. Sample sizes are illustrated for a hypothetical cross-sectional survey from an African population assuming a known or unknown change point. RESULTS: Overall, data simulation demonstrates that power is strongly affected by assuming a known or unknown change point. Small sample sizes are sufficient to detect strong reductions in SCR, but invariantly lead to poor precision of estimates for current SCR. In this situation, sample size is better determined by controlling the precision of SCR estimates. Conversely larger sample sizes are required for detecting more subtle reductions in malaria transmission but those invariantly increase precision whilst reducing putative estimation bias. CONCLUSIONS: The proposed sample size calculator, although based on data simulation, shows promise of being easily applicable to a range of populations and survey types. Since the change point is a major source of uncertainty, obtaining or assuming prior information about this parameter might reduce both the sample size and the chance of generating biased SCR estimates. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12936-015-1050-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-46962972015-12-31 Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate Sepúlveda, Nuno Paulino, Carlos Daniel Drakeley, Chris Malar J Methodology BACKGROUND: Several studies have highlighted the use of serological data in detecting a reduction in malaria transmission intensity. These studies have typically used serology as an adjunct measure and no formal examination of sample size calculations for this approach has been conducted. METHODS: A sample size calculator is proposed for cross-sectional surveys using data simulation from a reverse catalytic model assuming a reduction in seroconversion rate (SCR) at a given change point before sampling. This calculator is based on logistic approximations for the underlying power curves to detect a reduction in SCR in relation to the hypothesis of a stable SCR for the same data. Sample sizes are illustrated for a hypothetical cross-sectional survey from an African population assuming a known or unknown change point. RESULTS: Overall, data simulation demonstrates that power is strongly affected by assuming a known or unknown change point. Small sample sizes are sufficient to detect strong reductions in SCR, but invariantly lead to poor precision of estimates for current SCR. In this situation, sample size is better determined by controlling the precision of SCR estimates. Conversely larger sample sizes are required for detecting more subtle reductions in malaria transmission but those invariantly increase precision whilst reducing putative estimation bias. CONCLUSIONS: The proposed sample size calculator, although based on data simulation, shows promise of being easily applicable to a range of populations and survey types. Since the change point is a major source of uncertainty, obtaining or assuming prior information about this parameter might reduce both the sample size and the chance of generating biased SCR estimates. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12936-015-1050-3) contains supplementary material, which is available to authorized users. BioMed Central 2015-12-30 /pmc/articles/PMC4696297/ /pubmed/26715538 http://dx.doi.org/10.1186/s12936-015-1050-3 Text en © Sepúlveda et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology
Sepúlveda, Nuno
Paulino, Carlos Daniel
Drakeley, Chris
Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
title Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
title_full Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
title_fullStr Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
title_full_unstemmed Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
title_short Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
title_sort sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696297/
https://www.ncbi.nlm.nih.gov/pubmed/26715538
http://dx.doi.org/10.1186/s12936-015-1050-3
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