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MaizeGDB update: new tools, data and interface for the maize model organism database

MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, t...

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Autores principales: Andorf, Carson M., Cannon, Ethalinda K., Portwood, John L., Gardiner, Jack M., Harper, Lisa C., Schaeffer, Mary L., Braun, Bremen L., Campbell, Darwin A., Vinnakota, Abhinav G., Sribalusu, Venktanaga V., Huerta, Miranda, Cho, Kyoung Tak, Wimalanathan, Kokulapalan, Richter, Jacqueline D., Mauch, Emily D., Rao, Bhavani S., Birkett, Scott M., Sen, Taner Z., Lawrence-Dill, Carolyn J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702771/
https://www.ncbi.nlm.nih.gov/pubmed/26432828
http://dx.doi.org/10.1093/nar/gkv1007
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author Andorf, Carson M.
Cannon, Ethalinda K.
Portwood, John L.
Gardiner, Jack M.
Harper, Lisa C.
Schaeffer, Mary L.
Braun, Bremen L.
Campbell, Darwin A.
Vinnakota, Abhinav G.
Sribalusu, Venktanaga V.
Huerta, Miranda
Cho, Kyoung Tak
Wimalanathan, Kokulapalan
Richter, Jacqueline D.
Mauch, Emily D.
Rao, Bhavani S.
Birkett, Scott M.
Sen, Taner Z.
Lawrence-Dill, Carolyn J.
author_facet Andorf, Carson M.
Cannon, Ethalinda K.
Portwood, John L.
Gardiner, Jack M.
Harper, Lisa C.
Schaeffer, Mary L.
Braun, Bremen L.
Campbell, Darwin A.
Vinnakota, Abhinav G.
Sribalusu, Venktanaga V.
Huerta, Miranda
Cho, Kyoung Tak
Wimalanathan, Kokulapalan
Richter, Jacqueline D.
Mauch, Emily D.
Rao, Bhavani S.
Birkett, Scott M.
Sen, Taner Z.
Lawrence-Dill, Carolyn J.
author_sort Andorf, Carson M.
collection PubMed
description MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org.
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spelling pubmed-47027712016-01-07 MaizeGDB update: new tools, data and interface for the maize model organism database Andorf, Carson M. Cannon, Ethalinda K. Portwood, John L. Gardiner, Jack M. Harper, Lisa C. Schaeffer, Mary L. Braun, Bremen L. Campbell, Darwin A. Vinnakota, Abhinav G. Sribalusu, Venktanaga V. Huerta, Miranda Cho, Kyoung Tak Wimalanathan, Kokulapalan Richter, Jacqueline D. Mauch, Emily D. Rao, Bhavani S. Birkett, Scott M. Sen, Taner Z. Lawrence-Dill, Carolyn J. Nucleic Acids Res Database Issue MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org. Oxford University Press 2016-01-04 2015-10-01 /pmc/articles/PMC4702771/ /pubmed/26432828 http://dx.doi.org/10.1093/nar/gkv1007 Text en © Published by Oxford University Press on behalf of Nucleic Acids Research 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.
spellingShingle Database Issue
Andorf, Carson M.
Cannon, Ethalinda K.
Portwood, John L.
Gardiner, Jack M.
Harper, Lisa C.
Schaeffer, Mary L.
Braun, Bremen L.
Campbell, Darwin A.
Vinnakota, Abhinav G.
Sribalusu, Venktanaga V.
Huerta, Miranda
Cho, Kyoung Tak
Wimalanathan, Kokulapalan
Richter, Jacqueline D.
Mauch, Emily D.
Rao, Bhavani S.
Birkett, Scott M.
Sen, Taner Z.
Lawrence-Dill, Carolyn J.
MaizeGDB update: new tools, data and interface for the maize model organism database
title MaizeGDB update: new tools, data and interface for the maize model organism database
title_full MaizeGDB update: new tools, data and interface for the maize model organism database
title_fullStr MaizeGDB update: new tools, data and interface for the maize model organism database
title_full_unstemmed MaizeGDB update: new tools, data and interface for the maize model organism database
title_short MaizeGDB update: new tools, data and interface for the maize model organism database
title_sort maizegdb update: new tools, data and interface for the maize model organism database
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702771/
https://www.ncbi.nlm.nih.gov/pubmed/26432828
http://dx.doi.org/10.1093/nar/gkv1007
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