Cargando…
The SIDER database of drugs and side effects
Unwanted side effects of drugs are a burden on patients and a severe impediment in the development of new drugs. At the same time, adverse drug reactions (ADRs) recorded during clinical trials are an important source of human phenotypic data. It is therefore essential to combine data on drugs, targe...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702794/ https://www.ncbi.nlm.nih.gov/pubmed/26481350 http://dx.doi.org/10.1093/nar/gkv1075 |
_version_ | 1782408651804246016 |
---|---|
author | Kuhn, Michael Letunic, Ivica Jensen, Lars Juhl Bork, Peer |
author_facet | Kuhn, Michael Letunic, Ivica Jensen, Lars Juhl Bork, Peer |
author_sort | Kuhn, Michael |
collection | PubMed |
description | Unwanted side effects of drugs are a burden on patients and a severe impediment in the development of new drugs. At the same time, adverse drug reactions (ADRs) recorded during clinical trials are an important source of human phenotypic data. It is therefore essential to combine data on drugs, targets and side effects into a more complete picture of the therapeutic mechanism of actions of drugs and the ways in which they cause adverse reactions. To this end, we have created the SIDER (‘Side Effect Resource’, http://sideeffects.embl.de) database of drugs and ADRs. The current release, SIDER 4, contains data on 1430 drugs, 5880 ADRs and 140 064 drug–ADR pairs, which is an increase of 40% compared to the previous version. For more fine-grained analyses, we extracted the frequency with which side effects occur from the package inserts. This information is available for 39% of drug–ADR pairs, 19% of which can be compared to the frequency under placebo treatment. SIDER furthermore contains a data set of drug indications, extracted from the package inserts using Natural Language Processing. These drug indications are used to reduce the rate of false positives by identifying medical terms that do not correspond to ADRs. |
format | Online Article Text |
id | pubmed-4702794 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47027942016-01-07 The SIDER database of drugs and side effects Kuhn, Michael Letunic, Ivica Jensen, Lars Juhl Bork, Peer Nucleic Acids Res Database Issue Unwanted side effects of drugs are a burden on patients and a severe impediment in the development of new drugs. At the same time, adverse drug reactions (ADRs) recorded during clinical trials are an important source of human phenotypic data. It is therefore essential to combine data on drugs, targets and side effects into a more complete picture of the therapeutic mechanism of actions of drugs and the ways in which they cause adverse reactions. To this end, we have created the SIDER (‘Side Effect Resource’, http://sideeffects.embl.de) database of drugs and ADRs. The current release, SIDER 4, contains data on 1430 drugs, 5880 ADRs and 140 064 drug–ADR pairs, which is an increase of 40% compared to the previous version. For more fine-grained analyses, we extracted the frequency with which side effects occur from the package inserts. This information is available for 39% of drug–ADR pairs, 19% of which can be compared to the frequency under placebo treatment. SIDER furthermore contains a data set of drug indications, extracted from the package inserts using Natural Language Processing. These drug indications are used to reduce the rate of false positives by identifying medical terms that do not correspond to ADRs. Oxford University Press 2016-01-04 2015-10-19 /pmc/articles/PMC4702794/ /pubmed/26481350 http://dx.doi.org/10.1093/nar/gkv1075 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Kuhn, Michael Letunic, Ivica Jensen, Lars Juhl Bork, Peer The SIDER database of drugs and side effects |
title | The SIDER database of drugs and side effects |
title_full | The SIDER database of drugs and side effects |
title_fullStr | The SIDER database of drugs and side effects |
title_full_unstemmed | The SIDER database of drugs and side effects |
title_short | The SIDER database of drugs and side effects |
title_sort | sider database of drugs and side effects |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702794/ https://www.ncbi.nlm.nih.gov/pubmed/26481350 http://dx.doi.org/10.1093/nar/gkv1075 |
work_keys_str_mv | AT kuhnmichael thesiderdatabaseofdrugsandsideeffects AT letunicivica thesiderdatabaseofdrugsandsideeffects AT jensenlarsjuhl thesiderdatabaseofdrugsandsideeffects AT borkpeer thesiderdatabaseofdrugsandsideeffects AT kuhnmichael siderdatabaseofdrugsandsideeffects AT letunicivica siderdatabaseofdrugsandsideeffects AT jensenlarsjuhl siderdatabaseofdrugsandsideeffects AT borkpeer siderdatabaseofdrugsandsideeffects |