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The Transporter Classification Database (TCDB): recent advances
The Transporter Classification Database (TCDB; http://www.tcdb.org) is a freely accessible reference database for transport protein research, which provides structural, functional, mechanistic, evolutionary and disease/medical information about transporters from organisms of all types. TCDB is the o...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702804/ https://www.ncbi.nlm.nih.gov/pubmed/26546518 http://dx.doi.org/10.1093/nar/gkv1103 |
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author | Saier, Milton H. Reddy, Vamsee S. Tsu, Brian V. Ahmed, Muhammad Saad Li, Chun Moreno-Hagelsieb, Gabriel |
author_facet | Saier, Milton H. Reddy, Vamsee S. Tsu, Brian V. Ahmed, Muhammad Saad Li, Chun Moreno-Hagelsieb, Gabriel |
author_sort | Saier, Milton H. |
collection | PubMed |
description | The Transporter Classification Database (TCDB; http://www.tcdb.org) is a freely accessible reference database for transport protein research, which provides structural, functional, mechanistic, evolutionary and disease/medical information about transporters from organisms of all types. TCDB is the only transport protein classification database adopted by the International Union of Biochemistry and Molecular Biology (IUBMB). It consists of more than 10 000 non-redundant transport systems with more than 11 000 reference citations, classified into over 1000 transporter families. Transporters in TCDB can be single or multi-component systems, categorized in a functional/phylogenetic hierarchical system of classes, subclasses, families, subfamilies and transport systems. TCDB also includes updated software designed to analyze the distinctive features of transport proteins, extending its usefulness. Here we present a comprehensive update of the database contents and features and summarize recent discoveries recorded in TCDB. |
format | Online Article Text |
id | pubmed-4702804 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47028042016-01-07 The Transporter Classification Database (TCDB): recent advances Saier, Milton H. Reddy, Vamsee S. Tsu, Brian V. Ahmed, Muhammad Saad Li, Chun Moreno-Hagelsieb, Gabriel Nucleic Acids Res Database Issue The Transporter Classification Database (TCDB; http://www.tcdb.org) is a freely accessible reference database for transport protein research, which provides structural, functional, mechanistic, evolutionary and disease/medical information about transporters from organisms of all types. TCDB is the only transport protein classification database adopted by the International Union of Biochemistry and Molecular Biology (IUBMB). It consists of more than 10 000 non-redundant transport systems with more than 11 000 reference citations, classified into over 1000 transporter families. Transporters in TCDB can be single or multi-component systems, categorized in a functional/phylogenetic hierarchical system of classes, subclasses, families, subfamilies and transport systems. TCDB also includes updated software designed to analyze the distinctive features of transport proteins, extending its usefulness. Here we present a comprehensive update of the database contents and features and summarize recent discoveries recorded in TCDB. Oxford University Press 2016-01-04 2015-11-05 /pmc/articles/PMC4702804/ /pubmed/26546518 http://dx.doi.org/10.1093/nar/gkv1103 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Saier, Milton H. Reddy, Vamsee S. Tsu, Brian V. Ahmed, Muhammad Saad Li, Chun Moreno-Hagelsieb, Gabriel The Transporter Classification Database (TCDB): recent advances |
title | The Transporter Classification Database (TCDB): recent advances |
title_full | The Transporter Classification Database (TCDB): recent advances |
title_fullStr | The Transporter Classification Database (TCDB): recent advances |
title_full_unstemmed | The Transporter Classification Database (TCDB): recent advances |
title_short | The Transporter Classification Database (TCDB): recent advances |
title_sort | transporter classification database (tcdb): recent advances |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702804/ https://www.ncbi.nlm.nih.gov/pubmed/26546518 http://dx.doi.org/10.1093/nar/gkv1103 |
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