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Tools and data services registry: a community effort to document bioinformatics resources

Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a sp...

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Autores principales: Ison, Jon, Rapacki, Kristoffer, Ménager, Hervé, Kalaš, Matúš, Rydza, Emil, Chmura, Piotr, Anthon, Christian, Beard, Niall, Berka, Karel, Bolser, Dan, Booth, Tim, Bretaudeau, Anthony, Brezovsky, Jan, Casadio, Rita, Cesareni, Gianni, Coppens, Frederik, Cornell, Michael, Cuccuru, Gianmauro, Davidsen, Kristian, Vedova, Gianluca Della, Dogan, Tunca, Doppelt-Azeroual, Olivia, Emery, Laura, Gasteiger, Elisabeth, Gatter, Thomas, Goldberg, Tatyana, Grosjean, Marie, Grüning, Björn, Helmer-Citterich, Manuela, Ienasescu, Hans, Ioannidis, Vassilios, Jespersen, Martin Closter, Jimenez, Rafael, Juty, Nick, Juvan, Peter, Koch, Maximilian, Laibe, Camille, Li, Jing-Woei, Licata, Luana, Mareuil, Fabien, Mičetić, Ivan, Friborg, Rune Møllegaard, Moretti, Sebastien, Morris, Chris, Möller, Steffen, Nenadic, Aleksandra, Peterson, Hedi, Profiti, Giuseppe, Rice, Peter, Romano, Paolo, Roncaglia, Paola, Saidi, Rabie, Schafferhans, Andrea, Schwämmle, Veit, Smith, Callum, Sperotto, Maria Maddalena, Stockinger, Heinz, Vařeková, Radka Svobodová, Tosatto, Silvio C.E., de la Torre, Victor, Uva, Paolo, Via, Allegra, Yachdav, Guy, Zambelli, Federico, Vriend, Gert, Rost, Burkhard, Parkinson, Helen, Løngreen, Peter, Brunak, Søren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702812/
https://www.ncbi.nlm.nih.gov/pubmed/26538599
http://dx.doi.org/10.1093/nar/gkv1116
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author Ison, Jon
Rapacki, Kristoffer
Ménager, Hervé
Kalaš, Matúš
Rydza, Emil
Chmura, Piotr
Anthon, Christian
Beard, Niall
Berka, Karel
Bolser, Dan
Booth, Tim
Bretaudeau, Anthony
Brezovsky, Jan
Casadio, Rita
Cesareni, Gianni
Coppens, Frederik
Cornell, Michael
Cuccuru, Gianmauro
Davidsen, Kristian
Vedova, Gianluca Della
Dogan, Tunca
Doppelt-Azeroual, Olivia
Emery, Laura
Gasteiger, Elisabeth
Gatter, Thomas
Goldberg, Tatyana
Grosjean, Marie
Grüning, Björn
Helmer-Citterich, Manuela
Ienasescu, Hans
Ioannidis, Vassilios
Jespersen, Martin Closter
Jimenez, Rafael
Juty, Nick
Juvan, Peter
Koch, Maximilian
Laibe, Camille
Li, Jing-Woei
Licata, Luana
Mareuil, Fabien
Mičetić, Ivan
Friborg, Rune Møllegaard
Moretti, Sebastien
Morris, Chris
Möller, Steffen
Nenadic, Aleksandra
Peterson, Hedi
Profiti, Giuseppe
Rice, Peter
Romano, Paolo
Roncaglia, Paola
Saidi, Rabie
Schafferhans, Andrea
Schwämmle, Veit
Smith, Callum
Sperotto, Maria Maddalena
Stockinger, Heinz
Vařeková, Radka Svobodová
Tosatto, Silvio C.E.
de la Torre, Victor
Uva, Paolo
Via, Allegra
Yachdav, Guy
Zambelli, Federico
Vriend, Gert
Rost, Burkhard
Parkinson, Helen
Løngreen, Peter
Brunak, Søren
author_facet Ison, Jon
Rapacki, Kristoffer
Ménager, Hervé
Kalaš, Matúš
Rydza, Emil
Chmura, Piotr
Anthon, Christian
Beard, Niall
Berka, Karel
Bolser, Dan
Booth, Tim
Bretaudeau, Anthony
Brezovsky, Jan
Casadio, Rita
Cesareni, Gianni
Coppens, Frederik
Cornell, Michael
Cuccuru, Gianmauro
Davidsen, Kristian
Vedova, Gianluca Della
Dogan, Tunca
Doppelt-Azeroual, Olivia
Emery, Laura
Gasteiger, Elisabeth
Gatter, Thomas
Goldberg, Tatyana
Grosjean, Marie
Grüning, Björn
Helmer-Citterich, Manuela
Ienasescu, Hans
Ioannidis, Vassilios
Jespersen, Martin Closter
Jimenez, Rafael
Juty, Nick
Juvan, Peter
Koch, Maximilian
Laibe, Camille
Li, Jing-Woei
Licata, Luana
Mareuil, Fabien
Mičetić, Ivan
Friborg, Rune Møllegaard
Moretti, Sebastien
Morris, Chris
Möller, Steffen
Nenadic, Aleksandra
Peterson, Hedi
Profiti, Giuseppe
Rice, Peter
Romano, Paolo
Roncaglia, Paola
Saidi, Rabie
Schafferhans, Andrea
Schwämmle, Veit
Smith, Callum
Sperotto, Maria Maddalena
Stockinger, Heinz
Vařeková, Radka Svobodová
Tosatto, Silvio C.E.
de la Torre, Victor
Uva, Paolo
Via, Allegra
Yachdav, Guy
Zambelli, Federico
Vriend, Gert
Rost, Burkhard
Parkinson, Helen
Løngreen, Peter
Brunak, Søren
author_sort Ison, Jon
collection PubMed
description Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR—the European infrastructure for biological information—that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.
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spelling pubmed-47028122016-01-07 Tools and data services registry: a community effort to document bioinformatics resources Ison, Jon Rapacki, Kristoffer Ménager, Hervé Kalaš, Matúš Rydza, Emil Chmura, Piotr Anthon, Christian Beard, Niall Berka, Karel Bolser, Dan Booth, Tim Bretaudeau, Anthony Brezovsky, Jan Casadio, Rita Cesareni, Gianni Coppens, Frederik Cornell, Michael Cuccuru, Gianmauro Davidsen, Kristian Vedova, Gianluca Della Dogan, Tunca Doppelt-Azeroual, Olivia Emery, Laura Gasteiger, Elisabeth Gatter, Thomas Goldberg, Tatyana Grosjean, Marie Grüning, Björn Helmer-Citterich, Manuela Ienasescu, Hans Ioannidis, Vassilios Jespersen, Martin Closter Jimenez, Rafael Juty, Nick Juvan, Peter Koch, Maximilian Laibe, Camille Li, Jing-Woei Licata, Luana Mareuil, Fabien Mičetić, Ivan Friborg, Rune Møllegaard Moretti, Sebastien Morris, Chris Möller, Steffen Nenadic, Aleksandra Peterson, Hedi Profiti, Giuseppe Rice, Peter Romano, Paolo Roncaglia, Paola Saidi, Rabie Schafferhans, Andrea Schwämmle, Veit Smith, Callum Sperotto, Maria Maddalena Stockinger, Heinz Vařeková, Radka Svobodová Tosatto, Silvio C.E. de la Torre, Victor Uva, Paolo Via, Allegra Yachdav, Guy Zambelli, Federico Vriend, Gert Rost, Burkhard Parkinson, Helen Løngreen, Peter Brunak, Søren Nucleic Acids Res Database Issue Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR—the European infrastructure for biological information—that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools. Oxford University Press 2016-01-04 2015-11-03 /pmc/articles/PMC4702812/ /pubmed/26538599 http://dx.doi.org/10.1093/nar/gkv1116 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Ison, Jon
Rapacki, Kristoffer
Ménager, Hervé
Kalaš, Matúš
Rydza, Emil
Chmura, Piotr
Anthon, Christian
Beard, Niall
Berka, Karel
Bolser, Dan
Booth, Tim
Bretaudeau, Anthony
Brezovsky, Jan
Casadio, Rita
Cesareni, Gianni
Coppens, Frederik
Cornell, Michael
Cuccuru, Gianmauro
Davidsen, Kristian
Vedova, Gianluca Della
Dogan, Tunca
Doppelt-Azeroual, Olivia
Emery, Laura
Gasteiger, Elisabeth
Gatter, Thomas
Goldberg, Tatyana
Grosjean, Marie
Grüning, Björn
Helmer-Citterich, Manuela
Ienasescu, Hans
Ioannidis, Vassilios
Jespersen, Martin Closter
Jimenez, Rafael
Juty, Nick
Juvan, Peter
Koch, Maximilian
Laibe, Camille
Li, Jing-Woei
Licata, Luana
Mareuil, Fabien
Mičetić, Ivan
Friborg, Rune Møllegaard
Moretti, Sebastien
Morris, Chris
Möller, Steffen
Nenadic, Aleksandra
Peterson, Hedi
Profiti, Giuseppe
Rice, Peter
Romano, Paolo
Roncaglia, Paola
Saidi, Rabie
Schafferhans, Andrea
Schwämmle, Veit
Smith, Callum
Sperotto, Maria Maddalena
Stockinger, Heinz
Vařeková, Radka Svobodová
Tosatto, Silvio C.E.
de la Torre, Victor
Uva, Paolo
Via, Allegra
Yachdav, Guy
Zambelli, Federico
Vriend, Gert
Rost, Burkhard
Parkinson, Helen
Løngreen, Peter
Brunak, Søren
Tools and data services registry: a community effort to document bioinformatics resources
title Tools and data services registry: a community effort to document bioinformatics resources
title_full Tools and data services registry: a community effort to document bioinformatics resources
title_fullStr Tools and data services registry: a community effort to document bioinformatics resources
title_full_unstemmed Tools and data services registry: a community effort to document bioinformatics resources
title_short Tools and data services registry: a community effort to document bioinformatics resources
title_sort tools and data services registry: a community effort to document bioinformatics resources
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702812/
https://www.ncbi.nlm.nih.gov/pubmed/26538599
http://dx.doi.org/10.1093/nar/gkv1116
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