Cargando…

NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings

The Network of Cancer Genes (NCG, http://ncg.kcl.ac.uk/) is a manually curated repository of cancer genes derived from the scientific literature. Due to the increasing amount of cancer genomic data, we have introduced a more robust procedure to extract cancer genes from published cancer mutational s...

Descripción completa

Detalles Bibliográficos
Autores principales: An, Omer, Dall'Olio, Giovanni M., Mourikis, Thanos P., Ciccarelli, Francesca D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702816/
https://www.ncbi.nlm.nih.gov/pubmed/26516186
http://dx.doi.org/10.1093/nar/gkv1123
_version_ 1782408656870965248
author An, Omer
Dall'Olio, Giovanni M.
Mourikis, Thanos P.
Ciccarelli, Francesca D.
author_facet An, Omer
Dall'Olio, Giovanni M.
Mourikis, Thanos P.
Ciccarelli, Francesca D.
author_sort An, Omer
collection PubMed
description The Network of Cancer Genes (NCG, http://ncg.kcl.ac.uk/) is a manually curated repository of cancer genes derived from the scientific literature. Due to the increasing amount of cancer genomic data, we have introduced a more robust procedure to extract cancer genes from published cancer mutational screenings and two curators independently reviewed each publication. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational screenings of 13 315 cancer samples from 49 cancer types and 24 primary sites. In addition to collecting cancer genes, NCG also provides information on the experimental validation that supports the role of these genes in cancer and annotates their properties (duplicability, evolutionary origin, expression profile, function and interactions with proteins and miRNAs).
format Online
Article
Text
id pubmed-4702816
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-47028162016-01-07 NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings An, Omer Dall'Olio, Giovanni M. Mourikis, Thanos P. Ciccarelli, Francesca D. Nucleic Acids Res Database Issue The Network of Cancer Genes (NCG, http://ncg.kcl.ac.uk/) is a manually curated repository of cancer genes derived from the scientific literature. Due to the increasing amount of cancer genomic data, we have introduced a more robust procedure to extract cancer genes from published cancer mutational screenings and two curators independently reviewed each publication. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational screenings of 13 315 cancer samples from 49 cancer types and 24 primary sites. In addition to collecting cancer genes, NCG also provides information on the experimental validation that supports the role of these genes in cancer and annotates their properties (duplicability, evolutionary origin, expression profile, function and interactions with proteins and miRNAs). Oxford University Press 2016-01-04 2015-10-29 /pmc/articles/PMC4702816/ /pubmed/26516186 http://dx.doi.org/10.1093/nar/gkv1123 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
An, Omer
Dall'Olio, Giovanni M.
Mourikis, Thanos P.
Ciccarelli, Francesca D.
NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
title NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
title_full NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
title_fullStr NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
title_full_unstemmed NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
title_short NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
title_sort ncg 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702816/
https://www.ncbi.nlm.nih.gov/pubmed/26516186
http://dx.doi.org/10.1093/nar/gkv1123
work_keys_str_mv AT anomer ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings
AT dalloliogiovannim ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings
AT mourikisthanosp ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings
AT ciccarellifrancescad ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings