Cargando…
NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings
The Network of Cancer Genes (NCG, http://ncg.kcl.ac.uk/) is a manually curated repository of cancer genes derived from the scientific literature. Due to the increasing amount of cancer genomic data, we have introduced a more robust procedure to extract cancer genes from published cancer mutational s...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702816/ https://www.ncbi.nlm.nih.gov/pubmed/26516186 http://dx.doi.org/10.1093/nar/gkv1123 |
_version_ | 1782408656870965248 |
---|---|
author | An, Omer Dall'Olio, Giovanni M. Mourikis, Thanos P. Ciccarelli, Francesca D. |
author_facet | An, Omer Dall'Olio, Giovanni M. Mourikis, Thanos P. Ciccarelli, Francesca D. |
author_sort | An, Omer |
collection | PubMed |
description | The Network of Cancer Genes (NCG, http://ncg.kcl.ac.uk/) is a manually curated repository of cancer genes derived from the scientific literature. Due to the increasing amount of cancer genomic data, we have introduced a more robust procedure to extract cancer genes from published cancer mutational screenings and two curators independently reviewed each publication. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational screenings of 13 315 cancer samples from 49 cancer types and 24 primary sites. In addition to collecting cancer genes, NCG also provides information on the experimental validation that supports the role of these genes in cancer and annotates their properties (duplicability, evolutionary origin, expression profile, function and interactions with proteins and miRNAs). |
format | Online Article Text |
id | pubmed-4702816 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47028162016-01-07 NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings An, Omer Dall'Olio, Giovanni M. Mourikis, Thanos P. Ciccarelli, Francesca D. Nucleic Acids Res Database Issue The Network of Cancer Genes (NCG, http://ncg.kcl.ac.uk/) is a manually curated repository of cancer genes derived from the scientific literature. Due to the increasing amount of cancer genomic data, we have introduced a more robust procedure to extract cancer genes from published cancer mutational screenings and two curators independently reviewed each publication. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational screenings of 13 315 cancer samples from 49 cancer types and 24 primary sites. In addition to collecting cancer genes, NCG also provides information on the experimental validation that supports the role of these genes in cancer and annotates their properties (duplicability, evolutionary origin, expression profile, function and interactions with proteins and miRNAs). Oxford University Press 2016-01-04 2015-10-29 /pmc/articles/PMC4702816/ /pubmed/26516186 http://dx.doi.org/10.1093/nar/gkv1123 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue An, Omer Dall'Olio, Giovanni M. Mourikis, Thanos P. Ciccarelli, Francesca D. NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
title | NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
title_full | NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
title_fullStr | NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
title_full_unstemmed | NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
title_short | NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
title_sort | ncg 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702816/ https://www.ncbi.nlm.nih.gov/pubmed/26516186 http://dx.doi.org/10.1093/nar/gkv1123 |
work_keys_str_mv | AT anomer ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings AT dalloliogiovannim ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings AT mourikisthanosp ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings AT ciccarellifrancescad ncg50updatesofamanuallycuratedrepositoryofcancergenesandassociatedpropertiesfromcancermutationalscreenings |