Cargando…

Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing

Since its creation in 2006, Norine remains the unique knowledgebase dedicated to non-ribosomal peptides (NRPs). These secondary metabolites, produced by bacteria and fungi, harbor diverse interesting biological activities (such as antibiotic, antitumor, siderophore or surfactant) directly related to...

Descripción completa

Detalles Bibliográficos
Autores principales: Flissi, Areski, Dufresne, Yoann, Michalik, Juraj, Tonon, Laurie, Janot, Stéphane, Noé, Laurent, Jacques, Philippe, Leclère, Valérie, Pupin, Maude
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702827/
https://www.ncbi.nlm.nih.gov/pubmed/26527733
http://dx.doi.org/10.1093/nar/gkv1143
_version_ 1782408659359236096
author Flissi, Areski
Dufresne, Yoann
Michalik, Juraj
Tonon, Laurie
Janot, Stéphane
Noé, Laurent
Jacques, Philippe
Leclère, Valérie
Pupin, Maude
author_facet Flissi, Areski
Dufresne, Yoann
Michalik, Juraj
Tonon, Laurie
Janot, Stéphane
Noé, Laurent
Jacques, Philippe
Leclère, Valérie
Pupin, Maude
author_sort Flissi, Areski
collection PubMed
description Since its creation in 2006, Norine remains the unique knowledgebase dedicated to non-ribosomal peptides (NRPs). These secondary metabolites, produced by bacteria and fungi, harbor diverse interesting biological activities (such as antibiotic, antitumor, siderophore or surfactant) directly related to the diversity of their structures. The Norine team goal is to collect the NRPs and provide tools to analyze them efficiently. We have developed a user-friendly interface and dedicated tools to provide a complete bioinformatics platform. The knowledgebase gathers abundant and valuable annotations on more than 1100 NRPs. To increase the quantity of described NRPs and improve the quality of associated annotations, we are now opening Norine to crowdsourcing. We believe that contributors from the scientific community are the best experts to annotate the NRPs they work on. We have developed MyNorine to facilitate the submission of new NRPs or modifications of stored ones. This article presents MyNorine and other novelties of Norine interface released since the first publication. Norine is freely accessible from the following URL: http://bioinfo.lifl.fr/NRP.
format Online
Article
Text
id pubmed-4702827
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-47028272016-01-07 Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing Flissi, Areski Dufresne, Yoann Michalik, Juraj Tonon, Laurie Janot, Stéphane Noé, Laurent Jacques, Philippe Leclère, Valérie Pupin, Maude Nucleic Acids Res Database Issue Since its creation in 2006, Norine remains the unique knowledgebase dedicated to non-ribosomal peptides (NRPs). These secondary metabolites, produced by bacteria and fungi, harbor diverse interesting biological activities (such as antibiotic, antitumor, siderophore or surfactant) directly related to the diversity of their structures. The Norine team goal is to collect the NRPs and provide tools to analyze them efficiently. We have developed a user-friendly interface and dedicated tools to provide a complete bioinformatics platform. The knowledgebase gathers abundant and valuable annotations on more than 1100 NRPs. To increase the quantity of described NRPs and improve the quality of associated annotations, we are now opening Norine to crowdsourcing. We believe that contributors from the scientific community are the best experts to annotate the NRPs they work on. We have developed MyNorine to facilitate the submission of new NRPs or modifications of stored ones. This article presents MyNorine and other novelties of Norine interface released since the first publication. Norine is freely accessible from the following URL: http://bioinfo.lifl.fr/NRP. Oxford University Press 2016-01-04 2015-11-02 /pmc/articles/PMC4702827/ /pubmed/26527733 http://dx.doi.org/10.1093/nar/gkv1143 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Flissi, Areski
Dufresne, Yoann
Michalik, Juraj
Tonon, Laurie
Janot, Stéphane
Noé, Laurent
Jacques, Philippe
Leclère, Valérie
Pupin, Maude
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
title Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
title_full Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
title_fullStr Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
title_full_unstemmed Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
title_short Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
title_sort norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702827/
https://www.ncbi.nlm.nih.gov/pubmed/26527733
http://dx.doi.org/10.1093/nar/gkv1143
work_keys_str_mv AT flissiareski norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT dufresneyoann norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT michalikjuraj norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT tononlaurie norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT janotstephane norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT noelaurent norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT jacquesphilippe norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT leclerevalerie norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing
AT pupinmaude norinetheknowledgebasededicatedtononribosomalpeptidesisnowopentocrowdsourcing