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GPCRdb: an information system for G protein-coupled receptors

Recent developments in G protein-coupled receptor (GPCR) structural biology and pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and have helped improve the scientific foundation for drug design studies. The GPCR database, GPCRdb, serves a dual role in disse...

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Autores principales: Isberg, Vignir, Mordalski, Stefan, Munk, Christian, Rataj, Krzysztof, Harpsøe, Kasper, Hauser, Alexander S., Vroling, Bas, Bojarski, Andrzej J., Vriend, Gert, Gloriam, David E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702843/
https://www.ncbi.nlm.nih.gov/pubmed/26582914
http://dx.doi.org/10.1093/nar/gkv1178
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author Isberg, Vignir
Mordalski, Stefan
Munk, Christian
Rataj, Krzysztof
Harpsøe, Kasper
Hauser, Alexander S.
Vroling, Bas
Bojarski, Andrzej J.
Vriend, Gert
Gloriam, David E.
author_facet Isberg, Vignir
Mordalski, Stefan
Munk, Christian
Rataj, Krzysztof
Harpsøe, Kasper
Hauser, Alexander S.
Vroling, Bas
Bojarski, Andrzej J.
Vriend, Gert
Gloriam, David E.
author_sort Isberg, Vignir
collection PubMed
description Recent developments in G protein-coupled receptor (GPCR) structural biology and pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and have helped improve the scientific foundation for drug design studies. The GPCR database, GPCRdb, serves a dual role in disseminating and enabling new scientific developments by providing reference data, analysis tools and interactive diagrams. This paper highlights new features in the fifth major GPCRdb release: (i) GPCR crystal structure browsing, superposition and display of ligand interactions; (ii) direct deposition by users of point mutations and their effects on ligand binding; (iii) refined snake and helix box residue diagram looks; and (iii) phylogenetic trees with receptor classification colour schemes. Under the hood, the entire GPCRdb front- and back-ends have been re-coded within one infrastructure, ensuring a smooth browsing experience and development. GPCRdb is available at http://www.gpcrdb.org/ and it's open source code at https://bitbucket.org/gpcr/protwis.
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spelling pubmed-47028432016-01-07 GPCRdb: an information system for G protein-coupled receptors Isberg, Vignir Mordalski, Stefan Munk, Christian Rataj, Krzysztof Harpsøe, Kasper Hauser, Alexander S. Vroling, Bas Bojarski, Andrzej J. Vriend, Gert Gloriam, David E. Nucleic Acids Res Database Issue Recent developments in G protein-coupled receptor (GPCR) structural biology and pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and have helped improve the scientific foundation for drug design studies. The GPCR database, GPCRdb, serves a dual role in disseminating and enabling new scientific developments by providing reference data, analysis tools and interactive diagrams. This paper highlights new features in the fifth major GPCRdb release: (i) GPCR crystal structure browsing, superposition and display of ligand interactions; (ii) direct deposition by users of point mutations and their effects on ligand binding; (iii) refined snake and helix box residue diagram looks; and (iii) phylogenetic trees with receptor classification colour schemes. Under the hood, the entire GPCRdb front- and back-ends have been re-coded within one infrastructure, ensuring a smooth browsing experience and development. GPCRdb is available at http://www.gpcrdb.org/ and it's open source code at https://bitbucket.org/gpcr/protwis. Oxford University Press 2016-01-04 2015-11-17 /pmc/articles/PMC4702843/ /pubmed/26582914 http://dx.doi.org/10.1093/nar/gkv1178 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Isberg, Vignir
Mordalski, Stefan
Munk, Christian
Rataj, Krzysztof
Harpsøe, Kasper
Hauser, Alexander S.
Vroling, Bas
Bojarski, Andrzej J.
Vriend, Gert
Gloriam, David E.
GPCRdb: an information system for G protein-coupled receptors
title GPCRdb: an information system for G protein-coupled receptors
title_full GPCRdb: an information system for G protein-coupled receptors
title_fullStr GPCRdb: an information system for G protein-coupled receptors
title_full_unstemmed GPCRdb: an information system for G protein-coupled receptors
title_short GPCRdb: an information system for G protein-coupled receptors
title_sort gpcrdb: an information system for g protein-coupled receptors
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702843/
https://www.ncbi.nlm.nih.gov/pubmed/26582914
http://dx.doi.org/10.1093/nar/gkv1178
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