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GPCRdb: an information system for G protein-coupled receptors
Recent developments in G protein-coupled receptor (GPCR) structural biology and pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and have helped improve the scientific foundation for drug design studies. The GPCR database, GPCRdb, serves a dual role in disse...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702843/ https://www.ncbi.nlm.nih.gov/pubmed/26582914 http://dx.doi.org/10.1093/nar/gkv1178 |
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author | Isberg, Vignir Mordalski, Stefan Munk, Christian Rataj, Krzysztof Harpsøe, Kasper Hauser, Alexander S. Vroling, Bas Bojarski, Andrzej J. Vriend, Gert Gloriam, David E. |
author_facet | Isberg, Vignir Mordalski, Stefan Munk, Christian Rataj, Krzysztof Harpsøe, Kasper Hauser, Alexander S. Vroling, Bas Bojarski, Andrzej J. Vriend, Gert Gloriam, David E. |
author_sort | Isberg, Vignir |
collection | PubMed |
description | Recent developments in G protein-coupled receptor (GPCR) structural biology and pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and have helped improve the scientific foundation for drug design studies. The GPCR database, GPCRdb, serves a dual role in disseminating and enabling new scientific developments by providing reference data, analysis tools and interactive diagrams. This paper highlights new features in the fifth major GPCRdb release: (i) GPCR crystal structure browsing, superposition and display of ligand interactions; (ii) direct deposition by users of point mutations and their effects on ligand binding; (iii) refined snake and helix box residue diagram looks; and (iii) phylogenetic trees with receptor classification colour schemes. Under the hood, the entire GPCRdb front- and back-ends have been re-coded within one infrastructure, ensuring a smooth browsing experience and development. GPCRdb is available at http://www.gpcrdb.org/ and it's open source code at https://bitbucket.org/gpcr/protwis. |
format | Online Article Text |
id | pubmed-4702843 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47028432016-01-07 GPCRdb: an information system for G protein-coupled receptors Isberg, Vignir Mordalski, Stefan Munk, Christian Rataj, Krzysztof Harpsøe, Kasper Hauser, Alexander S. Vroling, Bas Bojarski, Andrzej J. Vriend, Gert Gloriam, David E. Nucleic Acids Res Database Issue Recent developments in G protein-coupled receptor (GPCR) structural biology and pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and have helped improve the scientific foundation for drug design studies. The GPCR database, GPCRdb, serves a dual role in disseminating and enabling new scientific developments by providing reference data, analysis tools and interactive diagrams. This paper highlights new features in the fifth major GPCRdb release: (i) GPCR crystal structure browsing, superposition and display of ligand interactions; (ii) direct deposition by users of point mutations and their effects on ligand binding; (iii) refined snake and helix box residue diagram looks; and (iii) phylogenetic trees with receptor classification colour schemes. Under the hood, the entire GPCRdb front- and back-ends have been re-coded within one infrastructure, ensuring a smooth browsing experience and development. GPCRdb is available at http://www.gpcrdb.org/ and it's open source code at https://bitbucket.org/gpcr/protwis. Oxford University Press 2016-01-04 2015-11-17 /pmc/articles/PMC4702843/ /pubmed/26582914 http://dx.doi.org/10.1093/nar/gkv1178 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Isberg, Vignir Mordalski, Stefan Munk, Christian Rataj, Krzysztof Harpsøe, Kasper Hauser, Alexander S. Vroling, Bas Bojarski, Andrzej J. Vriend, Gert Gloriam, David E. GPCRdb: an information system for G protein-coupled receptors |
title | GPCRdb: an information system for G protein-coupled receptors |
title_full | GPCRdb: an information system for G protein-coupled receptors |
title_fullStr | GPCRdb: an information system for G protein-coupled receptors |
title_full_unstemmed | GPCRdb: an information system for G protein-coupled receptors |
title_short | GPCRdb: an information system for G protein-coupled receptors |
title_sort | gpcrdb: an information system for g protein-coupled receptors |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702843/ https://www.ncbi.nlm.nih.gov/pubmed/26582914 http://dx.doi.org/10.1093/nar/gkv1178 |
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