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MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity
Mitochondria are the only organelles in the animal cells that have their own genome. Due to a key role in energy production, generation of damaging factors (ROS, heat), and apoptosis, mitochondria and mtDNA in particular have long been considered one of the major players in the mechanisms of aging,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702847/ https://www.ncbi.nlm.nih.gov/pubmed/26590258 http://dx.doi.org/10.1093/nar/gkv1187 |
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author | Toren, Dmitri Barzilay, Thomer Tacutu, Robi Lehmann, Gilad Muradian, Khachik K. Fraifeld, Vadim E. |
author_facet | Toren, Dmitri Barzilay, Thomer Tacutu, Robi Lehmann, Gilad Muradian, Khachik K. Fraifeld, Vadim E. |
author_sort | Toren, Dmitri |
collection | PubMed |
description | Mitochondria are the only organelles in the animal cells that have their own genome. Due to a key role in energy production, generation of damaging factors (ROS, heat), and apoptosis, mitochondria and mtDNA in particular have long been considered one of the major players in the mechanisms of aging, longevity and age-related diseases. The rapidly increasing number of species with fully sequenced mtDNA, together with accumulated data on longevity records, provides a new fascinating basis for comparative analysis of the links between mtDNA features and animal longevity. To facilitate such analyses and to support the scientific community in carrying these out, we developed the MitoAge database containing calculated mtDNA compositional features of the entire mitochondrial genome, mtDNA coding (tRNA, rRNA, protein-coding genes) and non-coding (D-loop) regions, and codon usage/amino acids frequency for each protein-coding gene. MitoAge includes 922 species with fully sequenced mtDNA and maximum lifespan records. The database is available through the MitoAge website (www.mitoage.org or www.mitoage.info), which provides the necessary tools for searching, browsing, comparing and downloading the data sets of interest for selected taxonomic groups across the Kingdom Animalia. The MitoAge website assists in statistical analysis of different features of the mtDNA and their correlative links to longevity. |
format | Online Article Text |
id | pubmed-4702847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47028472016-01-07 MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity Toren, Dmitri Barzilay, Thomer Tacutu, Robi Lehmann, Gilad Muradian, Khachik K. Fraifeld, Vadim E. Nucleic Acids Res Database Issue Mitochondria are the only organelles in the animal cells that have their own genome. Due to a key role in energy production, generation of damaging factors (ROS, heat), and apoptosis, mitochondria and mtDNA in particular have long been considered one of the major players in the mechanisms of aging, longevity and age-related diseases. The rapidly increasing number of species with fully sequenced mtDNA, together with accumulated data on longevity records, provides a new fascinating basis for comparative analysis of the links between mtDNA features and animal longevity. To facilitate such analyses and to support the scientific community in carrying these out, we developed the MitoAge database containing calculated mtDNA compositional features of the entire mitochondrial genome, mtDNA coding (tRNA, rRNA, protein-coding genes) and non-coding (D-loop) regions, and codon usage/amino acids frequency for each protein-coding gene. MitoAge includes 922 species with fully sequenced mtDNA and maximum lifespan records. The database is available through the MitoAge website (www.mitoage.org or www.mitoage.info), which provides the necessary tools for searching, browsing, comparing and downloading the data sets of interest for selected taxonomic groups across the Kingdom Animalia. The MitoAge website assists in statistical analysis of different features of the mtDNA and their correlative links to longevity. Oxford University Press 2016-01-04 2015-11-20 /pmc/articles/PMC4702847/ /pubmed/26590258 http://dx.doi.org/10.1093/nar/gkv1187 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Toren, Dmitri Barzilay, Thomer Tacutu, Robi Lehmann, Gilad Muradian, Khachik K. Fraifeld, Vadim E. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity |
title | MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity |
title_full | MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity |
title_fullStr | MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity |
title_full_unstemmed | MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity |
title_short | MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity |
title_sort | mitoage: a database for comparative analysis of mitochondrial dna, with a special focus on animal longevity |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702847/ https://www.ncbi.nlm.nih.gov/pubmed/26590258 http://dx.doi.org/10.1093/nar/gkv1187 |
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