Cargando…
ORegAnno 3.0: a community-driven resource for curated regulatory annotation
The Open Regulatory Annotation database (ORegAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702855/ https://www.ncbi.nlm.nih.gov/pubmed/26578589 http://dx.doi.org/10.1093/nar/gkv1203 |
_version_ | 1782408665763938304 |
---|---|
author | Lesurf, Robert Cotto, Kelsy C. Wang, Grace Griffith, Malachi Kasaian, Katayoon Jones, Steven J. M. Montgomery, Stephen B. Griffith, Obi L. |
author_facet | Lesurf, Robert Cotto, Kelsy C. Wang, Grace Griffith, Malachi Kasaian, Katayoon Jones, Steven J. M. Montgomery, Stephen B. Griffith, Obi L. |
author_sort | Lesurf, Robert |
collection | PubMed |
description | The Open Regulatory Annotation database (ORegAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself from other regulatory resources by facilitating crowd-sourced interpretation and annotation of regulatory observations from the literature and highly curated resources. It contains a comprehensive annotation scheme that aims to describe both the elements and outcomes of regulatory events. Moreover, ORegAnno assembles these disparate data sources and annotations into a single, high quality catalogue of curated regulatory information. The current release is an update of the database previously featured in the NAR Database Issue, and now contains 1 948 307 records, across 18 species, with a combined coverage of 334 215 080 bp. Complete records, annotation, and other associated data are available for browsing and download at http://www.oreganno.org/. |
format | Online Article Text |
id | pubmed-4702855 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47028552016-01-07 ORegAnno 3.0: a community-driven resource for curated regulatory annotation Lesurf, Robert Cotto, Kelsy C. Wang, Grace Griffith, Malachi Kasaian, Katayoon Jones, Steven J. M. Montgomery, Stephen B. Griffith, Obi L. Nucleic Acids Res Database Issue The Open Regulatory Annotation database (ORegAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself from other regulatory resources by facilitating crowd-sourced interpretation and annotation of regulatory observations from the literature and highly curated resources. It contains a comprehensive annotation scheme that aims to describe both the elements and outcomes of regulatory events. Moreover, ORegAnno assembles these disparate data sources and annotations into a single, high quality catalogue of curated regulatory information. The current release is an update of the database previously featured in the NAR Database Issue, and now contains 1 948 307 records, across 18 species, with a combined coverage of 334 215 080 bp. Complete records, annotation, and other associated data are available for browsing and download at http://www.oreganno.org/. Oxford University Press 2016-01-04 2015-11-17 /pmc/articles/PMC4702855/ /pubmed/26578589 http://dx.doi.org/10.1093/nar/gkv1203 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Lesurf, Robert Cotto, Kelsy C. Wang, Grace Griffith, Malachi Kasaian, Katayoon Jones, Steven J. M. Montgomery, Stephen B. Griffith, Obi L. ORegAnno 3.0: a community-driven resource for curated regulatory annotation |
title | ORegAnno 3.0: a community-driven resource for curated regulatory annotation |
title_full | ORegAnno 3.0: a community-driven resource for curated regulatory annotation |
title_fullStr | ORegAnno 3.0: a community-driven resource for curated regulatory annotation |
title_full_unstemmed | ORegAnno 3.0: a community-driven resource for curated regulatory annotation |
title_short | ORegAnno 3.0: a community-driven resource for curated regulatory annotation |
title_sort | oreganno 3.0: a community-driven resource for curated regulatory annotation |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702855/ https://www.ncbi.nlm.nih.gov/pubmed/26578589 http://dx.doi.org/10.1093/nar/gkv1203 |
work_keys_str_mv | AT lesurfrobert oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT cottokelsyc oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT wanggrace oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT griffithmalachi oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT kasaiankatayoon oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT jonesstevenjm oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT montgomerystephenb oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT griffithobil oreganno30acommunitydrivenresourceforcuratedregulatoryannotation AT oreganno30acommunitydrivenresourceforcuratedregulatoryannotation |