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ORegAnno 3.0: a community-driven resource for curated regulatory annotation

The Open Regulatory Annotation database (ORegAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself...

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Autores principales: Lesurf, Robert, Cotto, Kelsy C., Wang, Grace, Griffith, Malachi, Kasaian, Katayoon, Jones, Steven J. M., Montgomery, Stephen B., Griffith, Obi L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702855/
https://www.ncbi.nlm.nih.gov/pubmed/26578589
http://dx.doi.org/10.1093/nar/gkv1203
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author Lesurf, Robert
Cotto, Kelsy C.
Wang, Grace
Griffith, Malachi
Kasaian, Katayoon
Jones, Steven J. M.
Montgomery, Stephen B.
Griffith, Obi L.
author_facet Lesurf, Robert
Cotto, Kelsy C.
Wang, Grace
Griffith, Malachi
Kasaian, Katayoon
Jones, Steven J. M.
Montgomery, Stephen B.
Griffith, Obi L.
author_sort Lesurf, Robert
collection PubMed
description The Open Regulatory Annotation database (ORegAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself from other regulatory resources by facilitating crowd-sourced interpretation and annotation of regulatory observations from the literature and highly curated resources. It contains a comprehensive annotation scheme that aims to describe both the elements and outcomes of regulatory events. Moreover, ORegAnno assembles these disparate data sources and annotations into a single, high quality catalogue of curated regulatory information. The current release is an update of the database previously featured in the NAR Database Issue, and now contains 1 948 307 records, across 18 species, with a combined coverage of 334 215 080 bp. Complete records, annotation, and other associated data are available for browsing and download at http://www.oreganno.org/.
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spelling pubmed-47028552016-01-07 ORegAnno 3.0: a community-driven resource for curated regulatory annotation Lesurf, Robert Cotto, Kelsy C. Wang, Grace Griffith, Malachi Kasaian, Katayoon Jones, Steven J. M. Montgomery, Stephen B. Griffith, Obi L. Nucleic Acids Res Database Issue The Open Regulatory Annotation database (ORegAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself from other regulatory resources by facilitating crowd-sourced interpretation and annotation of regulatory observations from the literature and highly curated resources. It contains a comprehensive annotation scheme that aims to describe both the elements and outcomes of regulatory events. Moreover, ORegAnno assembles these disparate data sources and annotations into a single, high quality catalogue of curated regulatory information. The current release is an update of the database previously featured in the NAR Database Issue, and now contains 1 948 307 records, across 18 species, with a combined coverage of 334 215 080 bp. Complete records, annotation, and other associated data are available for browsing and download at http://www.oreganno.org/. Oxford University Press 2016-01-04 2015-11-17 /pmc/articles/PMC4702855/ /pubmed/26578589 http://dx.doi.org/10.1093/nar/gkv1203 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Lesurf, Robert
Cotto, Kelsy C.
Wang, Grace
Griffith, Malachi
Kasaian, Katayoon
Jones, Steven J. M.
Montgomery, Stephen B.
Griffith, Obi L.
ORegAnno 3.0: a community-driven resource for curated regulatory annotation
title ORegAnno 3.0: a community-driven resource for curated regulatory annotation
title_full ORegAnno 3.0: a community-driven resource for curated regulatory annotation
title_fullStr ORegAnno 3.0: a community-driven resource for curated regulatory annotation
title_full_unstemmed ORegAnno 3.0: a community-driven resource for curated regulatory annotation
title_short ORegAnno 3.0: a community-driven resource for curated regulatory annotation
title_sort oreganno 3.0: a community-driven resource for curated regulatory annotation
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702855/
https://www.ncbi.nlm.nih.gov/pubmed/26578589
http://dx.doi.org/10.1093/nar/gkv1203
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