InsectBase: a resource for insect genomes and transcriptomes

The genomes and transcriptomes of hundreds of insects have been sequenced. However, insect community lacks an integrated, up-to-date collection of insect gene data. Here, we introduce the first release of InsectBase, available online at http://www.insect-genome.com. The database encompasses 138 inse...

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Autores principales: Yin, Chuanlin, Shen, Gengyu, Guo, Dianhao, Wang, Shuping, Ma, Xingzhou, Xiao, Huamei, Liu, Jinding, Zhang, Zan, Liu, Ying, Zhang, Yiqun, Yu, Kaixiang, Huang, Shuiqing, Li, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Database Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702856/
https://www.ncbi.nlm.nih.gov/pubmed/26578584
http://dx.doi.org/10.1093/nar/gkv1204
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author Yin, Chuanlin
Shen, Gengyu
Guo, Dianhao
Wang, Shuping
Ma, Xingzhou
Xiao, Huamei
Liu, Jinding
Zhang, Zan
Liu, Ying
Zhang, Yiqun
Yu, Kaixiang
Huang, Shuiqing
Li, Fei
author_facet Yin, Chuanlin
Shen, Gengyu
Guo, Dianhao
Wang, Shuping
Ma, Xingzhou
Xiao, Huamei
Liu, Jinding
Zhang, Zan
Liu, Ying
Zhang, Yiqun
Yu, Kaixiang
Huang, Shuiqing
Li, Fei
author_sort Yin, Chuanlin
collection PubMed
description The genomes and transcriptomes of hundreds of insects have been sequenced. However, insect community lacks an integrated, up-to-date collection of insect gene data. Here, we introduce the first release of InsectBase, available online at http://www.insect-genome.com. The database encompasses 138 insect genomes, 116 insect transcriptomes, 61 insect gene sets, 36 gene families of 60 insects, 7544 miRNAs of 69 insects, 96 925 piRNAs of Drosophila melanogaster and Chilo suppressalis, 2439 lncRNA of Nilaparvata lugens, 22 536 pathways of 78 insects, 678 881 untranslated regions (UTR) of 84 insects and 160 905 coding sequences (CDS) of 70 insects. This release contains over 12 million sequences and provides search functionality, a BLAST server, GBrowse, insect pathway construction, a Facebook-like network for the insect community (iFacebook), and phylogenetic analysis of selected genes.
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spelling pubmed-47028562016-01-07 InsectBase: a resource for insect genomes and transcriptomes Yin, Chuanlin Shen, Gengyu Guo, Dianhao Wang, Shuping Ma, Xingzhou Xiao, Huamei Liu, Jinding Zhang, Zan Liu, Ying Zhang, Yiqun Yu, Kaixiang Huang, Shuiqing Li, Fei Nucleic Acids Res Database Issue The genomes and transcriptomes of hundreds of insects have been sequenced. However, insect community lacks an integrated, up-to-date collection of insect gene data. Here, we introduce the first release of InsectBase, available online at http://www.insect-genome.com. The database encompasses 138 insect genomes, 116 insect transcriptomes, 61 insect gene sets, 36 gene families of 60 insects, 7544 miRNAs of 69 insects, 96 925 piRNAs of Drosophila melanogaster and Chilo suppressalis, 2439 lncRNA of Nilaparvata lugens, 22 536 pathways of 78 insects, 678 881 untranslated regions (UTR) of 84 insects and 160 905 coding sequences (CDS) of 70 insects. This release contains over 12 million sequences and provides search functionality, a BLAST server, GBrowse, insect pathway construction, a Facebook-like network for the insect community (iFacebook), and phylogenetic analysis of selected genes. Oxford University Press 2016-01-04 2015-11-17 /pmc/articles/PMC4702856/ /pubmed/26578584 http://dx.doi.org/10.1093/nar/gkv1204 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Yin, Chuanlin
Shen, Gengyu
Guo, Dianhao
Wang, Shuping
Ma, Xingzhou
Xiao, Huamei
Liu, Jinding
Zhang, Zan
Liu, Ying
Zhang, Yiqun
Yu, Kaixiang
Huang, Shuiqing
Li, Fei
InsectBase: a resource for insect genomes and transcriptomes
title InsectBase: a resource for insect genomes and transcriptomes
title_full InsectBase: a resource for insect genomes and transcriptomes
title_fullStr InsectBase: a resource for insect genomes and transcriptomes
title_full_unstemmed InsectBase: a resource for insect genomes and transcriptomes
title_short InsectBase: a resource for insect genomes and transcriptomes
title_sort insectbase: a resource for insect genomes and transcriptomes
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702856/
https://www.ncbi.nlm.nih.gov/pubmed/26578584
http://dx.doi.org/10.1093/nar/gkv1204
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