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Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information
Extensive drug discovery efforts have yielded many approved and candidate drugs targeting various targets in different biological pathways. Several freely accessible databases provide the drug, target and drug-targeted pathway information for facilitating drug discovery efforts, but there is an insu...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702870/ https://www.ncbi.nlm.nih.gov/pubmed/26578601 http://dx.doi.org/10.1093/nar/gkv1230 |
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author | Yang, Hong Qin, Chu Li, Ying Hong Tao, Lin Zhou, Jin Yu, Chun Yan Xu, Feng Chen, Zhe Zhu, Feng Chen, Yu Zong |
author_facet | Yang, Hong Qin, Chu Li, Ying Hong Tao, Lin Zhou, Jin Yu, Chun Yan Xu, Feng Chen, Zhe Zhu, Feng Chen, Yu Zong |
author_sort | Yang, Hong |
collection | PubMed |
description | Extensive drug discovery efforts have yielded many approved and candidate drugs targeting various targets in different biological pathways. Several freely accessible databases provide the drug, target and drug-targeted pathway information for facilitating drug discovery efforts, but there is an insufficient coverage of the clinical trial drugs and the drug-targeted pathways. Here, we describe an update of the Therapeutic Target Database (TTD) previously featured in NAR. The updated contents include: (i) significantly increased coverage of the clinical trial targets and drugs (1.6 and 2.3 times of the previous release, respectively), (ii) cross-links of most TTD target and drug entries to the corresponding pathway entries of KEGG, MetaCyc/BioCyc, NetPath, PANTHER pathway, Pathway Interaction Database (PID), PathWhiz, Reactome and WikiPathways, (iii) the convenient access of the multiple targets and drugs cross-linked to each of these pathway entries and (iv) the recently emerged approved and investigative drugs. This update makes TTD a more useful resource to complement other databases for facilitating the drug discovery efforts. TTD is accessible at http://bidd.nus.edu.sg/group/ttd/ttd.asp. |
format | Online Article Text |
id | pubmed-4702870 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47028702016-01-07 Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information Yang, Hong Qin, Chu Li, Ying Hong Tao, Lin Zhou, Jin Yu, Chun Yan Xu, Feng Chen, Zhe Zhu, Feng Chen, Yu Zong Nucleic Acids Res Database Issue Extensive drug discovery efforts have yielded many approved and candidate drugs targeting various targets in different biological pathways. Several freely accessible databases provide the drug, target and drug-targeted pathway information for facilitating drug discovery efforts, but there is an insufficient coverage of the clinical trial drugs and the drug-targeted pathways. Here, we describe an update of the Therapeutic Target Database (TTD) previously featured in NAR. The updated contents include: (i) significantly increased coverage of the clinical trial targets and drugs (1.6 and 2.3 times of the previous release, respectively), (ii) cross-links of most TTD target and drug entries to the corresponding pathway entries of KEGG, MetaCyc/BioCyc, NetPath, PANTHER pathway, Pathway Interaction Database (PID), PathWhiz, Reactome and WikiPathways, (iii) the convenient access of the multiple targets and drugs cross-linked to each of these pathway entries and (iv) the recently emerged approved and investigative drugs. This update makes TTD a more useful resource to complement other databases for facilitating the drug discovery efforts. TTD is accessible at http://bidd.nus.edu.sg/group/ttd/ttd.asp. Oxford University Press 2016-01-04 2015-11-17 /pmc/articles/PMC4702870/ /pubmed/26578601 http://dx.doi.org/10.1093/nar/gkv1230 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Yang, Hong Qin, Chu Li, Ying Hong Tao, Lin Zhou, Jin Yu, Chun Yan Xu, Feng Chen, Zhe Zhu, Feng Chen, Yu Zong Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
title | Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
title_full | Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
title_fullStr | Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
title_full_unstemmed | Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
title_short | Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
title_sort | therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702870/ https://www.ncbi.nlm.nih.gov/pubmed/26578601 http://dx.doi.org/10.1093/nar/gkv1230 |
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