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Biocuration of functional annotation at the European nucleotide archive

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report on ENA in 2015 regarding general activity, notable published data se...

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Autores principales: Gibson, Richard, Alako, Blaise, Amid, Clara, Cerdeño-Tárraga, Ana, Cleland, Iain, Goodgame, Neil, ten Hoopen, Petra, Jayathilaka, Suran, Kay, Simon, Leinonen, Rasko, Liu, Xin, Pallreddy, Swapna, Pakseresht, Nima, Rajan, Jeena, Rosselló, Marc, Silvester, Nicole, Smirnov, Dmitriy, Toribio, Ana Luisa, Vaughan, Daniel, Zalunin, Vadim, Cochrane, Guy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702917/
https://www.ncbi.nlm.nih.gov/pubmed/26615190
http://dx.doi.org/10.1093/nar/gkv1311
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author Gibson, Richard
Alako, Blaise
Amid, Clara
Cerdeño-Tárraga, Ana
Cleland, Iain
Goodgame, Neil
ten Hoopen, Petra
Jayathilaka, Suran
Kay, Simon
Leinonen, Rasko
Liu, Xin
Pallreddy, Swapna
Pakseresht, Nima
Rajan, Jeena
Rosselló, Marc
Silvester, Nicole
Smirnov, Dmitriy
Toribio, Ana Luisa
Vaughan, Daniel
Zalunin, Vadim
Cochrane, Guy
author_facet Gibson, Richard
Alako, Blaise
Amid, Clara
Cerdeño-Tárraga, Ana
Cleland, Iain
Goodgame, Neil
ten Hoopen, Petra
Jayathilaka, Suran
Kay, Simon
Leinonen, Rasko
Liu, Xin
Pallreddy, Swapna
Pakseresht, Nima
Rajan, Jeena
Rosselló, Marc
Silvester, Nicole
Smirnov, Dmitriy
Toribio, Ana Luisa
Vaughan, Daniel
Zalunin, Vadim
Cochrane, Guy
author_sort Gibson, Richard
collection PubMed
description The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report on ENA in 2015 regarding general activity, notable published data sets and major achievements. This is followed by a focus on sustainable biocuration of functional annotation, an area which has particularly felt the pressure of sequencing growth. The importance of functional annotation, how it can be submitted and the shifting role of the biocurator in the context of increasing volumes of data are all discussed.
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spelling pubmed-47029172016-01-07 Biocuration of functional annotation at the European nucleotide archive Gibson, Richard Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Goodgame, Neil ten Hoopen, Petra Jayathilaka, Suran Kay, Simon Leinonen, Rasko Liu, Xin Pallreddy, Swapna Pakseresht, Nima Rajan, Jeena Rosselló, Marc Silvester, Nicole Smirnov, Dmitriy Toribio, Ana Luisa Vaughan, Daniel Zalunin, Vadim Cochrane, Guy Nucleic Acids Res Database Issue The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report on ENA in 2015 regarding general activity, notable published data sets and major achievements. This is followed by a focus on sustainable biocuration of functional annotation, an area which has particularly felt the pressure of sequencing growth. The importance of functional annotation, how it can be submitted and the shifting role of the biocurator in the context of increasing volumes of data are all discussed. Oxford University Press 2016-01-04 2015-11-28 /pmc/articles/PMC4702917/ /pubmed/26615190 http://dx.doi.org/10.1093/nar/gkv1311 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Gibson, Richard
Alako, Blaise
Amid, Clara
Cerdeño-Tárraga, Ana
Cleland, Iain
Goodgame, Neil
ten Hoopen, Petra
Jayathilaka, Suran
Kay, Simon
Leinonen, Rasko
Liu, Xin
Pallreddy, Swapna
Pakseresht, Nima
Rajan, Jeena
Rosselló, Marc
Silvester, Nicole
Smirnov, Dmitriy
Toribio, Ana Luisa
Vaughan, Daniel
Zalunin, Vadim
Cochrane, Guy
Biocuration of functional annotation at the European nucleotide archive
title Biocuration of functional annotation at the European nucleotide archive
title_full Biocuration of functional annotation at the European nucleotide archive
title_fullStr Biocuration of functional annotation at the European nucleotide archive
title_full_unstemmed Biocuration of functional annotation at the European nucleotide archive
title_short Biocuration of functional annotation at the European nucleotide archive
title_sort biocuration of functional annotation at the european nucleotide archive
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702917/
https://www.ncbi.nlm.nih.gov/pubmed/26615190
http://dx.doi.org/10.1093/nar/gkv1311
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