Cargando…

EK3D: an E. coli K antigen 3-dimensional structure database

A very high rate of multidrug resistance (MDR) seen among Gram-negative bacteria such as Escherichia, Klebsiella, Salmonella, Shigella, etc. is a major threat to public health and safety. One of the major virulent determinants of Gram-negative bacteria is capsular polysaccharide or K antigen located...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kunduru, Bharathi Reddy, Nair, Sanjana Anilkumar, Rathinavelan, Thenmalarchelvi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702918/ https://www.ncbi.nlm.nih.gov/pubmed/26615200 http://dx.doi.org/10.1093/nar/gkv1313

Ejemplares similares

Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin
por: Sachdeva, Shivangi, et al.
Publicado: (2016)

GenoBase: comprehensive resource database of Escherichia coli K-12
por: Otsuka, Yuta, et al.
Publicado: (2014)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
por: Keseler, Ingrid M., et al.
Publicado: (2017)

3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes
por: Lu, Yiming, et al.
Publicado: (2017)

T3DB: the toxic exposome database
por: Wishart, David, et al.
Publicado: (2014)

eQuilibrator 3.0: a database solution for thermodynamic constant estimation
por: Beber, Moritz E, et al.
Publicado: (2021)

K-PAM: a unified platform to distinguish Klebsiella species K- and O-antigen types, model antigen structures and identify hypervirulent strains
por: Patro, L. Ponoop Prasad, et al.
Publicado: (2020)

3DIV: A 3D-genome Interaction Viewer and database
por: Yang, Dongchan, et al.
Publicado: (2018)

The immune epitope database (IEDB) 3.0
por: Vita, Randi, et al.
Publicado: (2014)

BRAD V3.0: an upgraded Brassicaceae database
por: Chen, Haixu, et al.
Publicado: (2021)

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity
por: Shugay, Mikhail, et al.
Publicado: (2018)

dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals
por: Huang, Moli, et al.
Publicado: (2018)

MoonProt 3.0: an update of the moonlighting proteins database
por: Chen, Chang, et al.
Publicado: (2020)

MitoMiner v3.1, an update on the mitochondrial proteomics database
por: Smith, Anthony C., et al.
Publicado: (2016)

APD3: the antimicrobial peptide database as a tool for research and education
por: Wang, Guangshun, et al.
Publicado: (2016)

CAMP(R3): a database on sequences, structures and signatures of antimicrobial peptides
por: Waghu, Faiza Hanif, et al.
Publicado: (2016)

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database
por: Cotto, Kelsy C, et al.
Publicado: (2018)

huARdb: human Antigen Receptor database for interactive clonotype-transcriptome analysis at the single-cell level
por: Wu, Lize, et al.
Publicado: (2021)

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands
por: Bonnardel, François, et al.
Publicado: (2019)

Structural diversity among Acinetobacter baumannii K-antigens and its implication in the in silico serotyping
por: Roshini, Janardhanaachari, et al.
Publicado: (2023)

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes
por: Santos, Alberto, et al.
Publicado: (2014)

sc-PDB: a 3D-database of ligandable binding sites—10 years on
por: Desaphy, Jérémy, et al.
Publicado: (2014)

DriverDBv3: a multi-omics database for cancer driver gene research
por: Liu, Shu-Hsuan, et al.
Publicado: (2020)

CoV3D: a database of high resolution coronavirus protein structures
por: Gowthaman, Ragul, et al.
Publicado: (2020)

HumanNet v3: an improved database of human gene networks for disease research
por: Kim, Chan Yeong, et al.
Publicado: (2021)

3DSNP 2.0: update and expansion of the noncoding genomic variant annotation database
por: Quan, Cheng, et al.
Publicado: (2021)

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12
por: Santos-Zavaleta, Alberto, et al.
Publicado: (2019)

The Transporter Classification Database (TCDB): recent advances
por: Saier, Milton H., et al.
Publicado: (2016)

sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria
por: Wang, Jiang, et al.
Publicado: (2016)

YM500v3: a database for small RNA sequencing in human cancer research
por: Chung, I-Fang, et al.
Publicado: (2017)

MethBank 3.0: a database of DNA methylomes across a variety of species
por: Li, Rujiao, et al.
Publicado: (2018)

MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems
por: Gumerov, Vadim M, et al.
Publicado: (2020)

SuperNatural 3.0—a database of natural products and natural product-based derivatives
por: Gallo, Kathleen, et al.
Publicado: (2022)

lncRNASNP v3: an updated database for functional variants in long non-coding RNAs
por: Yang, Yanbo, et al.
Publicado: (2022)

PICKLES v3: the updated database of pooled in vitro CRISPR knockout library essentiality screens
por: Novak, Lance C, et al.
Publicado: (2022)

HMDD v3.0: a database for experimentally supported human microRNA–disease associations
por: Huang, Zhou, et al.
Publicado: (2019)

OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines
por: Gurumayum, Sanathoi, et al.
Publicado: (2020)

The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes
por: Blin, Kai, et al.
Publicado: (2020)

DiseaseMeth version 3.0: a major expansion and update of the human disease methylation database
por: Xing, Jie, et al.
Publicado: (2021)

The Transporter Classification Database (TCDB): 2021 update
por: Saier, Milton H, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_a0eqkalvhc96g3o3gkdeq7ts44