BacDive – The Bacterial Diversity Metadatabase in 2016

BacDive–the Bacterial Diversity Metadatabase (http://bacdive.dsmz.de) provides strain-linked information about bacterial and archaeal biodiversity. The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology. The majo...

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Autores principales: Söhngen, Carola, Podstawka, Adam, Bunk, Boyke, Gleim, Dorothea, Vetcininova, Anna, Reimer, Lorenz Christian, Ebeling, Christian, Pendarovski, Cezar, Overmann, Jörg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Database Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702946/
https://www.ncbi.nlm.nih.gov/pubmed/26424852
http://dx.doi.org/10.1093/nar/gkv983
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author Söhngen, Carola
Podstawka, Adam
Bunk, Boyke
Gleim, Dorothea
Vetcininova, Anna
Reimer, Lorenz Christian
Ebeling, Christian
Pendarovski, Cezar
Overmann, Jörg
author_facet Söhngen, Carola
Podstawka, Adam
Bunk, Boyke
Gleim, Dorothea
Vetcininova, Anna
Reimer, Lorenz Christian
Ebeling, Christian
Pendarovski, Cezar
Overmann, Jörg
author_sort Söhngen, Carola
collection PubMed
description BacDive–the Bacterial Diversity Metadatabase (http://bacdive.dsmz.de) provides strain-linked information about bacterial and archaeal biodiversity. The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology. The majority of data is manually annotated and curated. Currently (with release 9/2015), BacDive covers 53 978 strains. Newly implemented RESTful web services provide instant access to the content in machine-readable XML and JSON format. Besides an overall increase of data content, BacDive offers new data fields and features, e.g. the search for gene names, plasmids or 16S rRNA in the advanced search, as well as improved linkage of entries to external life science web resources.
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spelling pubmed-47029462016-01-07 BacDive – The Bacterial Diversity Metadatabase in 2016 Söhngen, Carola Podstawka, Adam Bunk, Boyke Gleim, Dorothea Vetcininova, Anna Reimer, Lorenz Christian Ebeling, Christian Pendarovski, Cezar Overmann, Jörg Nucleic Acids Res Database Issue BacDive–the Bacterial Diversity Metadatabase (http://bacdive.dsmz.de) provides strain-linked information about bacterial and archaeal biodiversity. The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology. The majority of data is manually annotated and curated. Currently (with release 9/2015), BacDive covers 53 978 strains. Newly implemented RESTful web services provide instant access to the content in machine-readable XML and JSON format. Besides an overall increase of data content, BacDive offers new data fields and features, e.g. the search for gene names, plasmids or 16S rRNA in the advanced search, as well as improved linkage of entries to external life science web resources. Oxford University Press 2016-01-04 2015-09-30 /pmc/articles/PMC4702946/ /pubmed/26424852 http://dx.doi.org/10.1093/nar/gkv983 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Söhngen, Carola
Podstawka, Adam
Bunk, Boyke
Gleim, Dorothea
Vetcininova, Anna
Reimer, Lorenz Christian
Ebeling, Christian
Pendarovski, Cezar
Overmann, Jörg
BacDive – The Bacterial Diversity Metadatabase in 2016
title BacDive – The Bacterial Diversity Metadatabase in 2016
title_full BacDive – The Bacterial Diversity Metadatabase in 2016
title_fullStr BacDive – The Bacterial Diversity Metadatabase in 2016
title_full_unstemmed BacDive – The Bacterial Diversity Metadatabase in 2016
title_short BacDive – The Bacterial Diversity Metadatabase in 2016
title_sort bacdive – the bacterial diversity metadatabase in 2016
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702946/
https://www.ncbi.nlm.nih.gov/pubmed/26424852
http://dx.doi.org/10.1093/nar/gkv983
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