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Yes, one can obtain better quality structures from routine X-ray data collection
Single-crystal X-ray diffraction structural results for benzidine dihydrochloride, hydrated and protonated N,N,N,N-peri(dimethylamino)naphthalene chloride, triptycene, dichlorodimethyltriptycene and decamethylferrocene have been analysed. A critical discussion of the dependence of structural and the...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704080/ https://www.ncbi.nlm.nih.gov/pubmed/26870382 http://dx.doi.org/10.1107/S2052252515020941 |
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author | Sanjuan-Szklarz, W. Fabiola Hoser, Anna A. Gutmann, Matthias Madsen, Anders Østergaard Woźniak, Krzysztof |
author_facet | Sanjuan-Szklarz, W. Fabiola Hoser, Anna A. Gutmann, Matthias Madsen, Anders Østergaard Woźniak, Krzysztof |
author_sort | Sanjuan-Szklarz, W. Fabiola |
collection | PubMed |
description | Single-crystal X-ray diffraction structural results for benzidine dihydrochloride, hydrated and protonated N,N,N,N-peri(dimethylamino)naphthalene chloride, triptycene, dichlorodimethyltriptycene and decamethylferrocene have been analysed. A critical discussion of the dependence of structural and thermal parameters on resolution for these compounds is presented. Results of refinements against X-ray data, cut off to different resolutions from the high-resolution data files, are compared to structural models derived from neutron diffraction experiments. The Independent Atom Model (IAM) and the Transferable Aspherical Atom Model (TAAM) are tested. The average differences between the X-ray and neutron structural parameters (with the exception of valence angles defined by H atoms) decrease with the increasing 2θ(max) angle. The scale of differences between X-ray and neutron geometrical parameters can be significantly reduced when data are collected to the higher, than commonly used, 2θ(max) diffraction angles (for Mo Kα 2θ(max) > 65°). The final structural and thermal parameters obtained for the studied compounds using TAAM refinement are in better agreement with the neutron values than the IAM results for all resolutions and all compounds. By using TAAM, it is still possible to obtain accurate results even from low-resolution X-ray data. This is particularly important as TAAM is easy to apply and can routinely be used to improve the quality of structural investigations [Dominiak (2015 ▸). LSDB from UBDB. University of Buffalo, USA]. We can recommend that, in order to obtain more adequate (more accurate and precise) structural and displacement parameters during the IAM model refinement, data should be collected up to the larger diffraction angles, at least, for Mo Kα radiation to 2θ(max) = 65° (sin θ(max)/λ < 0.75 Å(−1)). The TAAM approach is a very good option to obtain more adequate results even using data collected to the lower 2θ(max) angles. Also the results of translation–libration–screw (TLS) analysis and vibrational entropy values are more reliable for 2θ(max) > 65°. |
format | Online Article Text |
id | pubmed-4704080 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-47040802016-02-11 Yes, one can obtain better quality structures from routine X-ray data collection Sanjuan-Szklarz, W. Fabiola Hoser, Anna A. Gutmann, Matthias Madsen, Anders Østergaard Woźniak, Krzysztof IUCrJ Research Papers Single-crystal X-ray diffraction structural results for benzidine dihydrochloride, hydrated and protonated N,N,N,N-peri(dimethylamino)naphthalene chloride, triptycene, dichlorodimethyltriptycene and decamethylferrocene have been analysed. A critical discussion of the dependence of structural and thermal parameters on resolution for these compounds is presented. Results of refinements against X-ray data, cut off to different resolutions from the high-resolution data files, are compared to structural models derived from neutron diffraction experiments. The Independent Atom Model (IAM) and the Transferable Aspherical Atom Model (TAAM) are tested. The average differences between the X-ray and neutron structural parameters (with the exception of valence angles defined by H atoms) decrease with the increasing 2θ(max) angle. The scale of differences between X-ray and neutron geometrical parameters can be significantly reduced when data are collected to the higher, than commonly used, 2θ(max) diffraction angles (for Mo Kα 2θ(max) > 65°). The final structural and thermal parameters obtained for the studied compounds using TAAM refinement are in better agreement with the neutron values than the IAM results for all resolutions and all compounds. By using TAAM, it is still possible to obtain accurate results even from low-resolution X-ray data. This is particularly important as TAAM is easy to apply and can routinely be used to improve the quality of structural investigations [Dominiak (2015 ▸). LSDB from UBDB. University of Buffalo, USA]. We can recommend that, in order to obtain more adequate (more accurate and precise) structural and displacement parameters during the IAM model refinement, data should be collected up to the larger diffraction angles, at least, for Mo Kα radiation to 2θ(max) = 65° (sin θ(max)/λ < 0.75 Å(−1)). The TAAM approach is a very good option to obtain more adequate results even using data collected to the lower 2θ(max) angles. Also the results of translation–libration–screw (TLS) analysis and vibrational entropy values are more reliable for 2θ(max) > 65°. International Union of Crystallography 2016-01-01 /pmc/articles/PMC4704080/ /pubmed/26870382 http://dx.doi.org/10.1107/S2052252515020941 Text en © W. Fabiola Sanjuan-Szklarz et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Sanjuan-Szklarz, W. Fabiola Hoser, Anna A. Gutmann, Matthias Madsen, Anders Østergaard Woźniak, Krzysztof Yes, one can obtain better quality structures from routine X-ray data collection |
title | Yes, one can obtain better quality structures from routine X-ray data collection |
title_full | Yes, one can obtain better quality structures from routine X-ray data collection |
title_fullStr | Yes, one can obtain better quality structures from routine X-ray data collection |
title_full_unstemmed | Yes, one can obtain better quality structures from routine X-ray data collection |
title_short | Yes, one can obtain better quality structures from routine X-ray data collection |
title_sort | yes, one can obtain better quality structures from routine x-ray data collection |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704080/ https://www.ncbi.nlm.nih.gov/pubmed/26870382 http://dx.doi.org/10.1107/S2052252515020941 |
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