Cargando…

IsoSeq analysis and functional annotation of the infratentorial ependymoma tumor tissue on PacBio RSII platform

Here, we sequenced and functionally annotated the long reads (1–2 kb) cDNAs library of an infratentorial ependymoma tumor tissue on PacBio RSII by Iso-Seq protocol using SMRT technology. 577 MB, data was generated from the brain tissues of ependymoma tumor patient, producing 1,19,313 high-quality re...

Descripción completa

Detalles Bibliográficos
Autores principales:	Singh, Neetu, Sahu, Dinesh Kumar, Chowdhry, Rebecca, Mishra, Archana, Goel, Madhu Mati, Faheem, Mohd, Srivastava, Chhitij, Ojha, Bal Krishna, Gupta, Devendra Kumar, Kant, Ravi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707247/ https://www.ncbi.nlm.nih.gov/pubmed/26862483 http://dx.doi.org/10.1016/j.mgene.2015.11.004

Ejemplares similares

nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing
por: Guizard, Sébastien, et al.
Publicado: (2023)

Radiation-induced Supratentorial Osteosarcoma Following Curative Treatment of Infratentorial Ependymoma in a Child
por: Vankipuram, Siddharth, et al.
Publicado: (2020)

IsoSeq transcriptome assembly of C(3) panicoid grasses provides tools to study evolutionary change in the Panicoideae
por: Carvalho, Daniel S., et al.
Publicado: (2020)

Infratentorial ependymomas—a study of the centre in Katowice
por: Mandera, Marek, et al.
Publicado: (2015)

PacBio Sequencing and Its Applications
por: Rhoads, Anthony, et al.
Publicado: (2015)

Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq and Nanopore-Based Direct RNA Sequencing
por: Zhao, Liangzhen, et al.
Publicado: (2019)

Alternative Splicing Regulation of Anthocyanin Biosynthesis in Camellia sinensis var. assamica Unveiled by PacBio Iso-Seq
por: Chen, Lijiao, et al.
Publicado: (2020)

Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in Oryza sativa L.
por: Schaarschmidt, Stephanie, et al.
Publicado: (2020)

Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe
por: Feng, Shouli, et al.
Publicado: (2019)

PacBio Iso-Seq Improves the Rainbow Trout Genome Annotation and Identifies Alternative Splicing Associated With Economically Important Phenotypes
por: Ali, Ali, et al.
Publicado: (2021)

HISEA: HIerarchical SEed Aligner for PacBio data
por: Khiste, Nilesh, et al.
Publicado: (2017)

Combined PacBio Iso-Seq and Illumina RNA-Seq Analysis of the Tuta absoluta (Meyrick) Transcriptome and Cytochrome P450 Genes
por: Liu, Min, et al.
Publicado: (2023)

Complete Genome Sequence of Potential Probiotic Lactobacillus sp. HFC8, Isolated from Human Gut Using PacBio SMRT Sequencing
por: Kumari, Madhu, et al.
Publicado: (2015)

PaSS: a sequencing simulator for PacBio sequencing
por: Zhang, Wenmin, et al.
Publicado: (2019)

MRI Features of Intracranial Anaplastic Ependymomas: A Comparison of Supratentorial and Infratentorial Lesions
por: Kuai, Xin-Ping, et al.
Publicado: (2020)

First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data
por: Carrère, Sébastien, et al.
Publicado: (2023)

Long-read sequencing of the human cytomegalovirus transcriptome with the Pacific Biosciences RSII platform
por: Balázs, Zsolt, et al.
Publicado: (2017)

Thrombosed Large Distal Posterior Inferior Cerebellar Artery Aneurysm Mimicking an Infratentorial Ependymoma
por: Woo, Peter Yat Ming, et al.
Publicado: (2014)

Improving PacBio Long Read Accuracy by Short Read Alignment
por: Au, Kin Fai, et al.
Publicado: (2012)

A fault-tolerant method for HLA typing with PacBio data
por: Chang, Chia-Jung, et al.
Publicado: (2014)

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
por: Zuo, Chunman, et al.
Publicado: (2018)

Assembly of the durian chloroplast genome using long PacBio reads
por: Shearman, Jeremy R., et al.
Publicado: (2020)

Comprehensive analysis of structural variants in chickens using PacBio sequencing
por: Zhang, Jinxin, et al.
Publicado: (2022)

Corrigendum: Long-read sequencing of the human cytomegalovirus transcriptome with the pacific biosciences RSII platform
por: Balázs, Zsolt, et al.
Publicado: (2018)

Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing
por: Kong, Nguyet, et al.
Publicado: (2017)

The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource
por: Hong, Feng, et al.
Publicado: (2020)

PacBio sequencing output increased through uniform and directional fivefold concatenation
por: Kanwar, Nisha, et al.
Publicado: (2021)

Complete Genome Sequence of Neisseria musculi Using Illumina and PacBio Sequencing
por: Thapa, Eliza, et al.
Publicado: (2021)

Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear
por: Liu, Yueyuan, et al.
Publicado: (2022)

PacBio next-generation sequencing uncovers Apicomplexa diversity in different habitats
por: Gad, Mahmoud, et al.
Publicado: (2023)

Altered MicroRNA Expression Is Associated with Tumor Grade, Molecular Background and Outcome in Childhood Infratentorial Ependymoma
por: Zakrzewska, Magdalena, et al.
Publicado: (2016)

MICADo – Looking for Mutations in Targeted PacBio Cancer Data: An Alignment-Free Method
por: Rudewicz, Justine, et al.
Publicado: (2016)

PacBio Long Reads Improve Metagenomic Assemblies, Gene Catalogs, and Genome Binning
por: Xie, Haiying, et al.
Publicado: (2020)

Analysis and comprehensive comparison of PacBio and nanopore-based RNA sequencing of the Arabidopsis transcriptome
por: Cui, Jiawen, et al.
Publicado: (2020)

High-throughput long paired-end sequencing of a Fosmid library by PacBio
por: Dai, Zhaozhao, et al.
Publicado: (2019)

Complete chloroplast genome sequence of Populus euphratica from PacBio Sequel platform
por: Jiang, Zhen-Bo, et al.
Publicado: (2021)

Improved High-Throughput Sequencing of the Human Oral Microbiome: From Illumina to PacBio
por: Zhang, Jie, et al.
Publicado: (2020)

Draft genome assembly of the Aral barbell Luciobarbus brachycephalus using PacBio sequencing
por: Geng, Longwu, et al.
Publicado: (2021)

Comprehensive transcriptome characterization of Grus japonensis using PacBio SMRT and Illumina sequencing
por: Ye, Wentao, et al.
Publicado: (2021)

Comprehensive transcriptome analysis of sika deer antler using PacBio and Illumina sequencing
por: Zhang, Ranran, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_8e443fhaeciu5p94t9s1cj9bhr