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Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour

Models of cardiac mechanics are increasingly used to investigate cardiac physiology. These models are characterized by a high level of complexity, including the particular anisotropic material properties of biological tissue and the actively contracting material. A large number of independent simula...

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Autores principales: Land, Sander, Gurev, Viatcheslav, Arens, Sander, Augustin, Christoph M., Baron, Lukas, Blake, Robert, Bradley, Chris, Castro, Sebastian, Crozier, Andrew, Favino, Marco, Fastl, Thomas E., Fritz, Thomas, Gao, Hao, Gizzi, Alessio, Griffith, Boyce E., Hurtado, Daniel E., Krause, Rolf, Luo, Xiaoyu, Nash, Martyn P., Pezzuto, Simone, Plank, Gernot, Rossi, Simone, Ruprecht, Daniel, Seemann, Gunnar, Smith, Nicolas P., Sundnes, Joakim, Rice, J. Jeremy, Trayanova, Natalia, Wang, Dafang, Jenny Wang, Zhinuo, Niederer, Steven A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society Publishing 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707707/
https://www.ncbi.nlm.nih.gov/pubmed/26807042
http://dx.doi.org/10.1098/rspa.2015.0641
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author Land, Sander
Gurev, Viatcheslav
Arens, Sander
Augustin, Christoph M.
Baron, Lukas
Blake, Robert
Bradley, Chris
Castro, Sebastian
Crozier, Andrew
Favino, Marco
Fastl, Thomas E.
Fritz, Thomas
Gao, Hao
Gizzi, Alessio
Griffith, Boyce E.
Hurtado, Daniel E.
Krause, Rolf
Luo, Xiaoyu
Nash, Martyn P.
Pezzuto, Simone
Plank, Gernot
Rossi, Simone
Ruprecht, Daniel
Seemann, Gunnar
Smith, Nicolas P.
Sundnes, Joakim
Rice, J. Jeremy
Trayanova, Natalia
Wang, Dafang
Jenny Wang, Zhinuo
Niederer, Steven A.
author_facet Land, Sander
Gurev, Viatcheslav
Arens, Sander
Augustin, Christoph M.
Baron, Lukas
Blake, Robert
Bradley, Chris
Castro, Sebastian
Crozier, Andrew
Favino, Marco
Fastl, Thomas E.
Fritz, Thomas
Gao, Hao
Gizzi, Alessio
Griffith, Boyce E.
Hurtado, Daniel E.
Krause, Rolf
Luo, Xiaoyu
Nash, Martyn P.
Pezzuto, Simone
Plank, Gernot
Rossi, Simone
Ruprecht, Daniel
Seemann, Gunnar
Smith, Nicolas P.
Sundnes, Joakim
Rice, J. Jeremy
Trayanova, Natalia
Wang, Dafang
Jenny Wang, Zhinuo
Niederer, Steven A.
author_sort Land, Sander
collection PubMed
description Models of cardiac mechanics are increasingly used to investigate cardiac physiology. These models are characterized by a high level of complexity, including the particular anisotropic material properties of biological tissue and the actively contracting material. A large number of independent simulation codes have been developed, but a consistent way of verifying the accuracy and replicability of simulations is lacking. To aid in the verification of current and future cardiac mechanics solvers, this study provides three benchmark problems for cardiac mechanics. These benchmark problems test the ability to accurately simulate pressure-type forces that depend on the deformed objects geometry, anisotropic and spatially varying material properties similar to those seen in the left ventricle and active contractile forces. The benchmark was solved by 11 different groups to generate consensus solutions, with typical differences in higher-resolution solutions at approximately 0.5%, and consistent results between linear, quadratic and cubic finite elements as well as different approaches to simulating incompressible materials. Online tools and solutions are made available to allow these tests to be effectively used in verification of future cardiac mechanics software.
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spelling pubmed-47077072016-01-22 Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour Land, Sander Gurev, Viatcheslav Arens, Sander Augustin, Christoph M. Baron, Lukas Blake, Robert Bradley, Chris Castro, Sebastian Crozier, Andrew Favino, Marco Fastl, Thomas E. Fritz, Thomas Gao, Hao Gizzi, Alessio Griffith, Boyce E. Hurtado, Daniel E. Krause, Rolf Luo, Xiaoyu Nash, Martyn P. Pezzuto, Simone Plank, Gernot Rossi, Simone Ruprecht, Daniel Seemann, Gunnar Smith, Nicolas P. Sundnes, Joakim Rice, J. Jeremy Trayanova, Natalia Wang, Dafang Jenny Wang, Zhinuo Niederer, Steven A. Proc Math Phys Eng Sci Research Articles Models of cardiac mechanics are increasingly used to investigate cardiac physiology. These models are characterized by a high level of complexity, including the particular anisotropic material properties of biological tissue and the actively contracting material. A large number of independent simulation codes have been developed, but a consistent way of verifying the accuracy and replicability of simulations is lacking. To aid in the verification of current and future cardiac mechanics solvers, this study provides three benchmark problems for cardiac mechanics. These benchmark problems test the ability to accurately simulate pressure-type forces that depend on the deformed objects geometry, anisotropic and spatially varying material properties similar to those seen in the left ventricle and active contractile forces. The benchmark was solved by 11 different groups to generate consensus solutions, with typical differences in higher-resolution solutions at approximately 0.5%, and consistent results between linear, quadratic and cubic finite elements as well as different approaches to simulating incompressible materials. Online tools and solutions are made available to allow these tests to be effectively used in verification of future cardiac mechanics software. The Royal Society Publishing 2015-12-08 /pmc/articles/PMC4707707/ /pubmed/26807042 http://dx.doi.org/10.1098/rspa.2015.0641 Text en © 2015 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Research Articles
Land, Sander
Gurev, Viatcheslav
Arens, Sander
Augustin, Christoph M.
Baron, Lukas
Blake, Robert
Bradley, Chris
Castro, Sebastian
Crozier, Andrew
Favino, Marco
Fastl, Thomas E.
Fritz, Thomas
Gao, Hao
Gizzi, Alessio
Griffith, Boyce E.
Hurtado, Daniel E.
Krause, Rolf
Luo, Xiaoyu
Nash, Martyn P.
Pezzuto, Simone
Plank, Gernot
Rossi, Simone
Ruprecht, Daniel
Seemann, Gunnar
Smith, Nicolas P.
Sundnes, Joakim
Rice, J. Jeremy
Trayanova, Natalia
Wang, Dafang
Jenny Wang, Zhinuo
Niederer, Steven A.
Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
title Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
title_full Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
title_fullStr Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
title_full_unstemmed Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
title_short Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
title_sort verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707707/
https://www.ncbi.nlm.nih.gov/pubmed/26807042
http://dx.doi.org/10.1098/rspa.2015.0641
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