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Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour
Models of cardiac mechanics are increasingly used to investigate cardiac physiology. These models are characterized by a high level of complexity, including the particular anisotropic material properties of biological tissue and the actively contracting material. A large number of independent simula...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707707/ https://www.ncbi.nlm.nih.gov/pubmed/26807042 http://dx.doi.org/10.1098/rspa.2015.0641 |
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author | Land, Sander Gurev, Viatcheslav Arens, Sander Augustin, Christoph M. Baron, Lukas Blake, Robert Bradley, Chris Castro, Sebastian Crozier, Andrew Favino, Marco Fastl, Thomas E. Fritz, Thomas Gao, Hao Gizzi, Alessio Griffith, Boyce E. Hurtado, Daniel E. Krause, Rolf Luo, Xiaoyu Nash, Martyn P. Pezzuto, Simone Plank, Gernot Rossi, Simone Ruprecht, Daniel Seemann, Gunnar Smith, Nicolas P. Sundnes, Joakim Rice, J. Jeremy Trayanova, Natalia Wang, Dafang Jenny Wang, Zhinuo Niederer, Steven A. |
author_facet | Land, Sander Gurev, Viatcheslav Arens, Sander Augustin, Christoph M. Baron, Lukas Blake, Robert Bradley, Chris Castro, Sebastian Crozier, Andrew Favino, Marco Fastl, Thomas E. Fritz, Thomas Gao, Hao Gizzi, Alessio Griffith, Boyce E. Hurtado, Daniel E. Krause, Rolf Luo, Xiaoyu Nash, Martyn P. Pezzuto, Simone Plank, Gernot Rossi, Simone Ruprecht, Daniel Seemann, Gunnar Smith, Nicolas P. Sundnes, Joakim Rice, J. Jeremy Trayanova, Natalia Wang, Dafang Jenny Wang, Zhinuo Niederer, Steven A. |
author_sort | Land, Sander |
collection | PubMed |
description | Models of cardiac mechanics are increasingly used to investigate cardiac physiology. These models are characterized by a high level of complexity, including the particular anisotropic material properties of biological tissue and the actively contracting material. A large number of independent simulation codes have been developed, but a consistent way of verifying the accuracy and replicability of simulations is lacking. To aid in the verification of current and future cardiac mechanics solvers, this study provides three benchmark problems for cardiac mechanics. These benchmark problems test the ability to accurately simulate pressure-type forces that depend on the deformed objects geometry, anisotropic and spatially varying material properties similar to those seen in the left ventricle and active contractile forces. The benchmark was solved by 11 different groups to generate consensus solutions, with typical differences in higher-resolution solutions at approximately 0.5%, and consistent results between linear, quadratic and cubic finite elements as well as different approaches to simulating incompressible materials. Online tools and solutions are made available to allow these tests to be effectively used in verification of future cardiac mechanics software. |
format | Online Article Text |
id | pubmed-4707707 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-47077072016-01-22 Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour Land, Sander Gurev, Viatcheslav Arens, Sander Augustin, Christoph M. Baron, Lukas Blake, Robert Bradley, Chris Castro, Sebastian Crozier, Andrew Favino, Marco Fastl, Thomas E. Fritz, Thomas Gao, Hao Gizzi, Alessio Griffith, Boyce E. Hurtado, Daniel E. Krause, Rolf Luo, Xiaoyu Nash, Martyn P. Pezzuto, Simone Plank, Gernot Rossi, Simone Ruprecht, Daniel Seemann, Gunnar Smith, Nicolas P. Sundnes, Joakim Rice, J. Jeremy Trayanova, Natalia Wang, Dafang Jenny Wang, Zhinuo Niederer, Steven A. Proc Math Phys Eng Sci Research Articles Models of cardiac mechanics are increasingly used to investigate cardiac physiology. These models are characterized by a high level of complexity, including the particular anisotropic material properties of biological tissue and the actively contracting material. A large number of independent simulation codes have been developed, but a consistent way of verifying the accuracy and replicability of simulations is lacking. To aid in the verification of current and future cardiac mechanics solvers, this study provides three benchmark problems for cardiac mechanics. These benchmark problems test the ability to accurately simulate pressure-type forces that depend on the deformed objects geometry, anisotropic and spatially varying material properties similar to those seen in the left ventricle and active contractile forces. The benchmark was solved by 11 different groups to generate consensus solutions, with typical differences in higher-resolution solutions at approximately 0.5%, and consistent results between linear, quadratic and cubic finite elements as well as different approaches to simulating incompressible materials. Online tools and solutions are made available to allow these tests to be effectively used in verification of future cardiac mechanics software. The Royal Society Publishing 2015-12-08 /pmc/articles/PMC4707707/ /pubmed/26807042 http://dx.doi.org/10.1098/rspa.2015.0641 Text en © 2015 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Research Articles Land, Sander Gurev, Viatcheslav Arens, Sander Augustin, Christoph M. Baron, Lukas Blake, Robert Bradley, Chris Castro, Sebastian Crozier, Andrew Favino, Marco Fastl, Thomas E. Fritz, Thomas Gao, Hao Gizzi, Alessio Griffith, Boyce E. Hurtado, Daniel E. Krause, Rolf Luo, Xiaoyu Nash, Martyn P. Pezzuto, Simone Plank, Gernot Rossi, Simone Ruprecht, Daniel Seemann, Gunnar Smith, Nicolas P. Sundnes, Joakim Rice, J. Jeremy Trayanova, Natalia Wang, Dafang Jenny Wang, Zhinuo Niederer, Steven A. Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
title | Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
title_full | Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
title_fullStr | Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
title_full_unstemmed | Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
title_short | Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
title_sort | verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707707/ https://www.ncbi.nlm.nih.gov/pubmed/26807042 http://dx.doi.org/10.1098/rspa.2015.0641 |
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