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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods
Phaseolibacter flectens strain ATCC 12775(T) (Halpern et al., Int J Syst Evol Microbiol 63:268–273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710985/ https://www.ncbi.nlm.nih.gov/pubmed/26767091 http://dx.doi.org/10.1186/s40793-015-0127-5 |
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author | Aizenberg-Gershtein, Yana Izhaki, Ido Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pillay, Manoj Markowitz, Victor Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C. Halpern, Malka |
author_facet | Aizenberg-Gershtein, Yana Izhaki, Ido Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pillay, Manoj Markowitz, Victor Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C. Halpern, Malka |
author_sort | Aizenberg-Gershtein, Yana |
collection | PubMed |
description | Phaseolibacter flectens strain ATCC 12775(T) (Halpern et al., Int J Syst Evol Microbiol 63:268–273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0127-5) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4710985 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-47109852016-01-14 High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods Aizenberg-Gershtein, Yana Izhaki, Ido Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pillay, Manoj Markowitz, Victor Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C. Halpern, Malka Stand Genomic Sci Short Genome Report Phaseolibacter flectens strain ATCC 12775(T) (Halpern et al., Int J Syst Evol Microbiol 63:268–273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0127-5) contains supplementary material, which is available to authorized users. BioMed Central 2016-01-13 /pmc/articles/PMC4710985/ /pubmed/26767091 http://dx.doi.org/10.1186/s40793-015-0127-5 Text en © Aizenberg-Gershtein et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Aizenberg-Gershtein, Yana Izhaki, Ido Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pillay, Manoj Markowitz, Victor Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C. Halpern, Malka High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods |
title | High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods |
title_full | High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods |
title_fullStr | High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods |
title_full_unstemmed | High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods |
title_short | High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods |
title_sort | high quality permanent draft genome sequence of phaseolibacter flectens atcc 12775(t), a plant pathogen of french bean pods |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710985/ https://www.ncbi.nlm.nih.gov/pubmed/26767091 http://dx.doi.org/10.1186/s40793-015-0127-5 |
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