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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland

This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elem...

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Autores principales: Susanti, Dwi, Johnson, Eric F., Lapidus, Alla, Han, James, Reddy, T. B. K., Pilay, Manoj, Ivanova, Natalia N., Markowitz, Victor M., Woyke, Tanja, Kyrpides, Nikos C., Mukhopadhyay, Biswarup
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711178/
https://www.ncbi.nlm.nih.gov/pubmed/26767090
http://dx.doi.org/10.1186/s40793-015-0128-4
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author Susanti, Dwi
Johnson, Eric F.
Lapidus, Alla
Han, James
Reddy, T. B. K.
Pilay, Manoj
Ivanova, Natalia N.
Markowitz, Victor M.
Woyke, Tanja
Kyrpides, Nikos C.
Mukhopadhyay, Biswarup
author_facet Susanti, Dwi
Johnson, Eric F.
Lapidus, Alla
Han, James
Reddy, T. B. K.
Pilay, Manoj
Ivanova, Natalia N.
Markowitz, Victor M.
Woyke, Tanja
Kyrpides, Nikos C.
Mukhopadhyay, Biswarup
author_sort Susanti, Dwi
collection PubMed
description This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H(2)S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H(2) is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species.
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spelling pubmed-47111782016-01-14 Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland Susanti, Dwi Johnson, Eric F. Lapidus, Alla Han, James Reddy, T. B. K. Pilay, Manoj Ivanova, Natalia N. Markowitz, Victor M. Woyke, Tanja Kyrpides, Nikos C. Mukhopadhyay, Biswarup Stand Genomic Sci Short Genome Report This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H(2)S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H(2) is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species. BioMed Central 2016-01-13 /pmc/articles/PMC4711178/ /pubmed/26767090 http://dx.doi.org/10.1186/s40793-015-0128-4 Text en © Susanti et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Susanti, Dwi
Johnson, Eric F.
Lapidus, Alla
Han, James
Reddy, T. B. K.
Pilay, Manoj
Ivanova, Natalia N.
Markowitz, Victor M.
Woyke, Tanja
Kyrpides, Nikos C.
Mukhopadhyay, Biswarup
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_full Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_fullStr Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_full_unstemmed Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_short Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
title_sort permanent draft genome sequence of desulfurococcus mobilis type strain dsm 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of hveravellir, iceland
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711178/
https://www.ncbi.nlm.nih.gov/pubmed/26767090
http://dx.doi.org/10.1186/s40793-015-0128-4
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