Cargando…

Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms

The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) s...

Descripción completa

Detalles Bibliográficos
Autores principales: Jimenez-Carretero, Daniel, San Jose Estepar, Raul, Diaz Cacio, Mario, Ledesma-Carbayo, Maria J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711718/
https://www.ncbi.nlm.nih.gov/pubmed/26731653
http://dx.doi.org/10.1371/journal.pone.0146060
_version_ 1782409972582187008
author Jimenez-Carretero, Daniel
San Jose Estepar, Raul
Diaz Cacio, Mario
Ledesma-Carbayo, Maria J.
author_facet Jimenez-Carretero, Daniel
San Jose Estepar, Raul
Diaz Cacio, Mario
Ledesma-Carbayo, Maria J.
author_sort Jimenez-Carretero, Daniel
collection PubMed
description The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) separations. The design of synthetic computed tomography (CT) images of the lung could overcome these difficulties by providing a database of pseudorealistic cases in a constrained and controlled scenario where each part of the image is differentiated unequivocally. This work demonstrates a complete framework to generate computational anthropomorphic CT phantoms of the human lung automatically. Starting from biological and image-based knowledge about the topology and relationships between structures, the system is able to generate synthetic pulmonary arteries, veins, and airways using iterative growth methods that can be merged into a final simulated lung with realistic features. A dataset of 24 labeled anthropomorphic pulmonary CT phantoms were synthesized with the proposed system. Visual examination and quantitative measurements of intensity distributions, dispersion of structures and relationships between pulmonary air and blood flow systems show good correspondence between real and synthetic lungs (p > 0.05 with low Cohen’s d effect size and AUC values), supporting the potentiality of the tool and the usefulness of the generated phantoms in the biomedical image processing field.
format Online
Article
Text
id pubmed-4711718
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-47117182016-01-26 Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms Jimenez-Carretero, Daniel San Jose Estepar, Raul Diaz Cacio, Mario Ledesma-Carbayo, Maria J. PLoS One Research Article The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) separations. The design of synthetic computed tomography (CT) images of the lung could overcome these difficulties by providing a database of pseudorealistic cases in a constrained and controlled scenario where each part of the image is differentiated unequivocally. This work demonstrates a complete framework to generate computational anthropomorphic CT phantoms of the human lung automatically. Starting from biological and image-based knowledge about the topology and relationships between structures, the system is able to generate synthetic pulmonary arteries, veins, and airways using iterative growth methods that can be merged into a final simulated lung with realistic features. A dataset of 24 labeled anthropomorphic pulmonary CT phantoms were synthesized with the proposed system. Visual examination and quantitative measurements of intensity distributions, dispersion of structures and relationships between pulmonary air and blood flow systems show good correspondence between real and synthetic lungs (p > 0.05 with low Cohen’s d effect size and AUC values), supporting the potentiality of the tool and the usefulness of the generated phantoms in the biomedical image processing field. Public Library of Science 2016-01-05 /pmc/articles/PMC4711718/ /pubmed/26731653 http://dx.doi.org/10.1371/journal.pone.0146060 Text en © 2016 Jimenez-Carretero et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
spellingShingle Research Article
Jimenez-Carretero, Daniel
San Jose Estepar, Raul
Diaz Cacio, Mario
Ledesma-Carbayo, Maria J.
Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
title Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
title_full Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
title_fullStr Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
title_full_unstemmed Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
title_short Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
title_sort automatic synthesis of anthropomorphic pulmonary ct phantoms
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711718/
https://www.ncbi.nlm.nih.gov/pubmed/26731653
http://dx.doi.org/10.1371/journal.pone.0146060
work_keys_str_mv AT jimenezcarreterodaniel automaticsynthesisofanthropomorphicpulmonaryctphantoms
AT sanjoseesteparraul automaticsynthesisofanthropomorphicpulmonaryctphantoms
AT diazcaciomario automaticsynthesisofanthropomorphicpulmonaryctphantoms
AT ledesmacarbayomariaj automaticsynthesisofanthropomorphicpulmonaryctphantoms