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Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms
The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) s...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711718/ https://www.ncbi.nlm.nih.gov/pubmed/26731653 http://dx.doi.org/10.1371/journal.pone.0146060 |
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author | Jimenez-Carretero, Daniel San Jose Estepar, Raul Diaz Cacio, Mario Ledesma-Carbayo, Maria J. |
author_facet | Jimenez-Carretero, Daniel San Jose Estepar, Raul Diaz Cacio, Mario Ledesma-Carbayo, Maria J. |
author_sort | Jimenez-Carretero, Daniel |
collection | PubMed |
description | The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) separations. The design of synthetic computed tomography (CT) images of the lung could overcome these difficulties by providing a database of pseudorealistic cases in a constrained and controlled scenario where each part of the image is differentiated unequivocally. This work demonstrates a complete framework to generate computational anthropomorphic CT phantoms of the human lung automatically. Starting from biological and image-based knowledge about the topology and relationships between structures, the system is able to generate synthetic pulmonary arteries, veins, and airways using iterative growth methods that can be merged into a final simulated lung with realistic features. A dataset of 24 labeled anthropomorphic pulmonary CT phantoms were synthesized with the proposed system. Visual examination and quantitative measurements of intensity distributions, dispersion of structures and relationships between pulmonary air and blood flow systems show good correspondence between real and synthetic lungs (p > 0.05 with low Cohen’s d effect size and AUC values), supporting the potentiality of the tool and the usefulness of the generated phantoms in the biomedical image processing field. |
format | Online Article Text |
id | pubmed-4711718 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-47117182016-01-26 Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms Jimenez-Carretero, Daniel San Jose Estepar, Raul Diaz Cacio, Mario Ledesma-Carbayo, Maria J. PLoS One Research Article The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) separations. The design of synthetic computed tomography (CT) images of the lung could overcome these difficulties by providing a database of pseudorealistic cases in a constrained and controlled scenario where each part of the image is differentiated unequivocally. This work demonstrates a complete framework to generate computational anthropomorphic CT phantoms of the human lung automatically. Starting from biological and image-based knowledge about the topology and relationships between structures, the system is able to generate synthetic pulmonary arteries, veins, and airways using iterative growth methods that can be merged into a final simulated lung with realistic features. A dataset of 24 labeled anthropomorphic pulmonary CT phantoms were synthesized with the proposed system. Visual examination and quantitative measurements of intensity distributions, dispersion of structures and relationships between pulmonary air and blood flow systems show good correspondence between real and synthetic lungs (p > 0.05 with low Cohen’s d effect size and AUC values), supporting the potentiality of the tool and the usefulness of the generated phantoms in the biomedical image processing field. Public Library of Science 2016-01-05 /pmc/articles/PMC4711718/ /pubmed/26731653 http://dx.doi.org/10.1371/journal.pone.0146060 Text en © 2016 Jimenez-Carretero et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited |
spellingShingle | Research Article Jimenez-Carretero, Daniel San Jose Estepar, Raul Diaz Cacio, Mario Ledesma-Carbayo, Maria J. Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms |
title | Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms |
title_full | Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms |
title_fullStr | Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms |
title_full_unstemmed | Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms |
title_short | Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms |
title_sort | automatic synthesis of anthropomorphic pulmonary ct phantoms |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711718/ https://www.ncbi.nlm.nih.gov/pubmed/26731653 http://dx.doi.org/10.1371/journal.pone.0146060 |
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